View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2892_low_5 (Length: 477)
Name: NF2892_low_5
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 1599683 - 1599226
Alignment:
| Q |
18 |
tttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattgggac-----tttagagcttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1599683 |
tttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattgggacgggactttagagcttt |
1599584 |
T |
|
| Q |
113 |
aaaacatgtctagaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaaatatatatctagtt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599583 |
aaaacatgtctaaaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaaatatatatctagtt |
1599484 |
T |
|
| Q |
213 |
atgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaattaa--tataaccaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1599483 |
atgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaattaatatataaccaca |
1599384 |
T |
|
| Q |
311 |
aggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggttttggaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599383 |
aggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggttttggaa |
1599284 |
T |
|
| Q |
411 |
aa---gataattcctattcgatttgaaaccacagaacctacattcaaccttcatatca |
465 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599283 |
aagatgataattcctattcgatttgaaaccacagaacctacattcaaccttcatatca |
1599226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 41222373 - 41222434
Alignment:
| Q |
388 |
aaaagtacagttcggttttggaaaagataattcctattcgatttgaaaccacagaacctaca |
449 |
Q |
| |
|
||||||||| || || ||| ||||| ||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
41222373 |
aaaagtacaatttgggttttgaaaatatagttcctattcggtttgaaaccacataacctaca |
41222434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University