View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2892_low_7 (Length: 401)
Name: NF2892_low_7
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 38823717 - 38823386
Alignment:
| Q |
1 |
acggcaccgtcctctaaaatcaccatttgcagaacctgttccataaactttctaattttcaatttatgatttttgtgtttgtctcttaaatcaatcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823717 |
acggcaccgtcctctaaaatcaccatttgcagaacctgttccataaactttctaattttcaatttatgatttttgtgtttgtctcttaaatcaatcaaaa |
38823618 |
T |
|
| Q |
101 |
agtaacaaacatggaaa----------aacactggtgttgtttttcatcccttaagaatcgttttttaatctaaggattaaaaggattgttaatttaaaa |
190 |
Q |
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| T |
38823617 |
agtaaaaaacatagaaagaattttcgaaacactggtgttgtttttcatcccttaagaatcattttttaatctaaggattaaaaggattgttaatttaaaa |
38823518 |
T |
|
| Q |
191 |
tccatttc---------ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaatt |
281 |
Q |
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| T |
38823517 |
tccatttaatccacttgttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagtgttaattaattaatctcatcaaaatt |
38823418 |
T |
|
| Q |
282 |
gttcatgtggttatggatttgcaatgaaattg |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
38823417 |
gttcatgtggttatggatttgcaatgaaattg |
38823386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 26582186 - 26582513
Alignment:
| Q |
5 |
caccgtcctctaaaatcaccatttgcagaacctgttccataaactttctaattttcaatttatgatttttgtgtttgtctcttaaatcaatcaaaaagta |
104 |
Q |
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| T |
26582186 |
caccgtcctctaaaatcaccatttgcagatcctgttccataaactttttaatttttaatttatgatttttgtgtttgtctcttaaatcaatcaaaaagta |
26582285 |
T |
|
| Q |
105 |
acaaacatggaaa----------aacactggtgttgtttttcatcccttaagaatcgttttttaatctaaggattaaaaggattgttaatttaaaatcca |
194 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26582286 |
acaaacatagaaagaattttcgaaacactggtgttgtttttcatcccttaagaatcattttttaatctaaggattaaaaggattgttaatttaaaatcca |
26582385 |
T |
|
| Q |
195 |
tttc---------ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttc |
285 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26582386 |
tttaatccatttgttgtgattctaattttatctaattaattcgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttc |
26582485 |
T |
|
| Q |
286 |
atgtggttatggatttgcaatgaaattg |
313 |
Q |
| |
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| || ||||||||||||||||||||||| |
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| T |
26582486 |
aagttgttatggatttgcaatgaaattg |
26582513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 44390497 - 44390586
Alignment:
| Q |
199 |
ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttcatgt |
289 |
Q |
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| T |
44390497 |
ttgtgattctaattttaattaattaatttgttcttcaattttagaaagactcactgtttcaattaattaatctcatcaaaa-tgttcatgt |
44390586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 20168788 - 20168877
Alignment:
| Q |
199 |
ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttcatgt |
289 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||| |
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| T |
20168788 |
ttgtgattctaattttaattaattaatttgttcttcaattttagaaagactcactgtttcaattaattaatctcatcaaaa-tgttcatgt |
20168877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 28583985 - 28583927
Alignment:
| Q |
189 |
aatccatttcttgtgattctaattttatctaattaatttgttcttcaattttagaaaga |
247 |
Q |
| |
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||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
28583985 |
aatccctttgttgtgattctaattttaattaattaattttttcttcaattttagaaaga |
28583927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 2397952 - 2398086
Alignment:
| Q |
124 |
ggtgttgtttttcatcccttaagaatcgtttttt-aatctaa-ggattaaaaggattgttaatttaaaatccatt---------tcttgtgattctaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || |||| ||||||| |||||||| |||||||||| |||| | |||||||||||||| |
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| T |
2397952 |
ggtgttgtttttcatcccttaagactcgtttttttaacctaaaggattaagaggattgtcaatttaaaattcattcaatccctttgttgtgattctaatt |
2398051 |
T |
|
| Q |
213 |
ttatctaattaatttgttcttcaattttagaaaga |
247 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |
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| T |
2398052 |
ttaattaattaatttgttcttcaattttagaaaga |
2398086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 44095781 - 44095887
Alignment:
| Q |
209 |
aattttatctaattaatttgttcttcaattttagaaagactctca-gttttaattaattaatctcatcaaaat-tgttcatgtggttatgga-tttgcaa |
305 |
Q |
| |
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||||||| |||||||||| ||||||| ||||||||||| | ||| |||| |||||| ||||||||||||||| || |||||||||| || ||||||| |
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| T |
44095781 |
aattttaattaattaatttcttcttcagttttagaaaga-tttcatgtttcaattaagtaatctcatcaaaatcattttatgtggttatagattttgcaa |
44095879 |
T |
|
| Q |
306 |
tgaaattg |
313 |
Q |
| |
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|||||||| |
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|
| T |
44095880 |
tgaaattg |
44095887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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