View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2892_low_9 (Length: 280)
Name: NF2892_low_9
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_low_9 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 42892896 - 42892648
Alignment:
| Q |
15 |
caaaggagctaaatgacacaaaacagcaaatattagagatgttgggcaaatgaataaagaataacactaataattggatagattaaaacttacgaggaaa |
114 |
Q |
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| T |
42892896 |
caaaggagctaaatgacacaaaacagcaaatattagagatgttgggcaaatgaataaagaataacactaataat-ggatagattaaaacttacgaggaaa |
42892798 |
T |
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| Q |
115 |
tgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaaggtagtaactcctattagat |
214 |
Q |
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| T |
42892797 |
tgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaaggtagtaactcctattagat |
42892698 |
T |
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| Q |
215 |
ggtactttcggggcaaagcaactgaaaataaatacaaacaaagtttatgg |
264 |
Q |
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| T |
42892697 |
ggtactttcggggcaaagcaactgaaaataaatacaaacaaagtttatgg |
42892648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 112410 - 112506
Alignment:
| Q |
100 |
aaacttacgaggaaatgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaagg |
196 |
Q |
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| T |
112410 |
aaacttactaggaaatgacaaattttcaccagctgttgtcagcgatgatgctgaaatttggagtgccggagatggaatgttgggagaacaagtaagg |
112506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 9325789 - 9325693
Alignment:
| Q |
100 |
aaacttacgaggaaatgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaagg |
196 |
Q |
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| T |
9325789 |
aaacttactaggaaatgacaaattttcacaagctgttgtcagcgatgatgctgaaatttggagtgccggagatggaatgttgggagaacaagtaagg |
9325693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 20461857 - 20461952
Alignment:
| Q |
100 |
aaacttacgaggaaatgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaag |
195 |
Q |
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| T |
20461857 |
aaacttactaggaaatgacaaattttcacgagctgttgtcagcgatgatgctgaaatttggagtgccggagatggaatgttgggagaacaagtaag |
20461952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 20464238 - 20464333
Alignment:
| Q |
100 |
aaacttacgaggaaatgacatattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaacaagtaag |
195 |
Q |
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| T |
20464238 |
aaacttactaggaaatgacaaattttcacgagctgttgtcagcgatgatgctgaaatttggagtgccggagatggaatgttgggagaacaagtaag |
20464333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 28922155 - 28921977
Alignment:
| Q |
92 |
atagattaaaacttacgaggaaatgaca---tattttcaccagctgttgccagcaatgttgctgtaatttgtagtgcagaagatcgaatgataggagaac |
188 |
Q |
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| T |
28922155 |
atagattgaaacttaccaggaaatgatagattattctcaccaactgttgctggcaatgttgctgaaatttgtactgccggagatggaatgataggtgcac |
28922056 |
T |
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| Q |
189 |
aagtaaggtagt---aactcctattagatggtactttcggggcaaagcaactgaaaataaatacaaacaaagtttatgg |
264 |
Q |
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| T |
28922055 |
aagcaagggcgttaaaattcacatcagatgtcacttttggggtaaagcagctgaaaataaataccaacatagtttatgg |
28921977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 28922253 - 28922212
Alignment:
| Q |
12 |
tagcaaaggagctaaatgacacaaaacagcaaatattagaga |
53 |
Q |
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| T |
28922253 |
tagcagaggagctaaatgacacaaaacagcaaaatttagaga |
28922212 |
T |
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