View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2893_high_1 (Length: 635)
Name: NF2893_high_1
Description: NF2893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2893_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 624
Target Start/End: Complemental strand, 8294157 - 8293547
Alignment:
| Q |
19 |
gcaaacactagtgtattaaaataagtataagtttcttttgattatgatgtaaaaggatcactaaagtatcttgacatcactatatnnnnnnnn---ggaa |
115 |
Q |
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| T |
8294157 |
gcaaacattagtgtattaaaataagtataagtttcttttgattttgatgtaaaaggatcactaaagtgtcttgacatcactatataaaaaaaaaaaggaa |
8294058 |
T |
|
| Q |
116 |
ttccaactagtatacttgtatttannnnnnn-cactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactaa |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8294057 |
ttccaactagtatacttgtatttattttttttcactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactat |
8293958 |
T |
|
| Q |
215 |
gacggagaaagctcgaaaaataacatcatcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaact |
314 |
Q |
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|||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293957 |
gacgaagaaagtgcggaaaataacatcgtcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaact |
8293858 |
T |
|
| Q |
315 |
cataactatataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293857 |
cataactatataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatac |
8293758 |
T |
|
| Q |
415 |
taatattctacatttgttattnnnnnnntagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacg |
514 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293757 |
taatattctacatttgttattaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacg |
8293658 |
T |
|
| Q |
515 |
cagcaacaaaatatctggaatcagagaaattaacacggaagagaagag-aaaaataaatggacacataagatttaccagtttcaatcaattgtaagcagc |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8293657 |
cagcaacaaaatatctggaatcagagaaattaacacggaagagaagagaaaaaataaatggacacataagatttaccagtttcagtcaattgtaagcagc |
8293558 |
T |
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| Q |
614 |
tccacaggttc |
624 |
Q |
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||||||||||| |
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| T |
8293557 |
tccacaggttc |
8293547 |
T |
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