View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2893_high_2 (Length: 445)
Name: NF2893_high_2
Description: NF2893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2893_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 12366296 - 12365856
Alignment:
| Q |
8 |
atgaacataataacttagagctctcagatagaagagagaaatttagaagaacacgtttttcataaaacacacttggactaatttcat------------a |
95 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||| | ||||||| | |
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| T |
12366296 |
atgaacataataacttagagctttcagaaagaagagagaaagttagaagaacatgtttttcataaaacacactaggatttatttcattcaagttgtgtga |
12366197 |
T |
|
| Q |
96 |
aatatgttacaactcttctccttttatagccaaggagatacattaagtacaaaaataaaactattcactcacatgccactaaaacactattcgcatgcat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
12366196 |
aatatgttacaactcttctccttttatagccaaggagatacattaaggacaaaaataaaactattcactcacatgc-actaaaacactattgacatgcat |
12366098 |
T |
|
| Q |
196 |
tataataat--------ggaaaacacttttatgacacttttgaccaaaatatcacattatttttcacacttagtagtaaaaacaaaaacataactattca |
287 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
12366097 |
tataataattttataatggaaaacactgttatgacacttttgaccaaaatgtcacattattttgcacacttagtagtaaaaacaaaaatataactattca |
12365998 |
T |
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| Q |
288 |
tgcacattgctattatgcaagacacgtttttgacacctatgccatcttggaaatgacttattggactcttatatgacatattagtctttgaagataggct |
387 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12365997 |
tgcacattgctattatgcaagacacgttattgacacacatgccatcttggaaatgacttattggactcttatatgacatattagtctttgaagatagact |
12365898 |
T |
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| Q |
388 |
cgtgacttgaggacgggtttggatcagacgaagagtagtagc |
429 |
Q |
| |
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| T |
12365897 |
cgtgacttggggacatgtttggatcagacgaagagtagtagc |
12365856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 19965446 - 19965782
Alignment:
| Q |
8 |
atgaacataataacttagagctctcagatagaagagagaaatttagaagaacacgtttttcataaaacacacttggacta-atttcat------------ |
94 |
Q |
| |
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|||| ||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| | ||||||||| ||| | |||| || |
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| T |
19965446 |
atgatcataataacttagagctttcagaaataagagagaaatttagaagaacatgtttttcttgaaacacactaggattttatttgattcaagttgtgag |
19965545 |
T |
|
| Q |
95 |
aaatatgttacaactcttctccttttatagccaaggagatacattaagtacaaaaataaaactattcactcacatgccact-aaaacactattcgcatgc |
193 |
Q |
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||| ||||||||| |||||||||||||||||||| ||| |||| ||| ||||| ||| |||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
19965546 |
aaagatgttacaattcttctccttttatagccaatgaggtacactaaagacaaagatagaactattcactcgcatgccactgaaaacactattggcatgc |
19965645 |
T |
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| Q |
194 |
attataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttttcacacttagtagtaaaaacaaaaacataactattcatgcaca |
293 |
Q |
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||||||| |||||| ||| |||||||||||||||||| ||||| |||||||||||| |||||||| || |||||||||| | | ||||| || | || | |
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| T |
19965646 |
attataactatggaagacatttttatgacacttttgactaaaatgtcacattattttgcacacttaatactaaaaacaaatatacaactaatcgtacata |
19965745 |
T |
|
| Q |
294 |
ttgctattatgcaagacacgtttttgacacctatgcc |
330 |
Q |
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| T |
19965746 |
ttgctattatgcaagacacgtttttgacacctatgcc |
19965782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 658005 - 657851
Alignment:
| Q |
97 |
atatgttacaactcttctccttttatagccaaggagatacattaagtacaaaaataaaactattcactcacatgccacta-aaacactattcgcatgcat |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||| | ||| | | |||||| ||| |||||| ||||| ||||| |||| | || | |
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| T |
658005 |
atatgttacaactcttctccttttatagccaatgagatacactaaagataaagacacaactatccacacacatgtcactataaacattattgaaaagctt |
657906 |
T |
|
| Q |
196 |
tataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttt |
250 |
Q |
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|| ||| |||||| ||| |||||||||||||||| || || |||||||||||| |
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| T |
657905 |
tacaattatggaagacatacttatgacacttttgactaacatgtcacattatttt |
657851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 6455875 - 6455808
Alignment:
| Q |
192 |
gcattataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttttcacactta |
259 |
Q |
| |
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|||||||||| |||||| ||| |||||| ||||||||||| ||||| |||||||||||| || ||||| |
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| T |
6455875 |
gcattataattatggaagacatttttataacacttttgactaaaatgtcacattattttgcatactta |
6455808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 6455647 - 6455599
Alignment:
| Q |
280 |
actattcatgcacattgctattatgcaagacacgtttttgacacctatg |
328 |
Q |
| |
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|||||| || ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
6455647 |
actatttatacacattgttattatgaaagacacgtttttgacacctatg |
6455599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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