View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2893_low_4 (Length: 276)

Name: NF2893_low_4
Description: NF2893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2893_low_4
NF2893_low_4
[»] chr4 (2 HSPs)
chr4 (1-261)||(55336113-55336373)
chr4 (4-157)||(55330779-55330932)
[»] chr2 (20 HSPs)
chr2 (1-148)||(8431120-8431267)
chr2 (1-153)||(8375878-8376030)
chr2 (1-132)||(8439094-8439225)
chr2 (1-132)||(8395561-8395692)
chr2 (1-132)||(8405880-8406011)
chr2 (46-153)||(8411976-8412083)
chr2 (46-153)||(8434074-8434181)
chr2 (46-135)||(8417212-8417301)
chr2 (5-94)||(8403959-8404048)
chr2 (204-261)||(8405754-8405811)
chr2 (13-129)||(8417081-8417197)
chr2 (223-258)||(8403801-8403836)
chr2 (223-261)||(8368125-8368163)
chr2 (223-261)||(8376094-8376132)
chr2 (223-261)||(8401247-8401285)
chr2 (223-261)||(8411874-8411912)
chr2 (223-261)||(8416955-8416993)
chr2 (223-261)||(8422824-8422862)
chr2 (223-261)||(8431025-8431063)
chr2 (223-261)||(8433972-8434010)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 55336373 - 55336113
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336373 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 55336274  T
Q  101 atagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacgacgaaggattttggtcagctatggttcctgtgatggcaggat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  55336273 atagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacgacgacggattttggtcagctatggtacctgtgatggcaggat 55336174  T
Q  201 caatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336173 caatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaat 55336113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 55330932 - 55330779
Alignment:
Q  4 ggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaata 103  Q
    |||| |||| ||||||||||||||||| || |  ||||| |||||||| ||||| |||||||||||||||||||| ||| |||| |||||| | ||||      
T  55330932 ggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatagcattaaaggttaataagagtttagcaact 55330833  T
Q  104 gcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaac 157  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55330832 gctggtccattactcactggaattgcagctataggttctgcatttgtaggaaac 55330779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8431267 - 8431120
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||| ||| |||||||  ||||||| |||||| ||||||| ||||| ||||||||||| |||||||||||| | ||||||||| |||||    
T  8431267 aatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggca 8431168  T
Q  101 atagcaggtccattactcactggaattgcagcaataggttctgcattt 148  Q
    || ||||| ||||||||| | ||||||||||| ||||| ||| |||||    
T  8431167 attgcagggccattactctcaggaattgcagctataggatctacattt 8431120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8375878 - 8376030
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| |||||||||||| | ||||||||| |||||    
T  8375878 aatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggca 8375977  T
Q  101 atagcaggtccattactcactggaattgcagcaataggttctgcatttgtagg 153  Q
    || ||||| ||||| ||||| ||||||||||| || || ||  ||||||||||    
T  8375978 attgcagggccattgctcacaggaattgcagctattggatcgacatttgtagg 8376030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8439225 - 8439094
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| |||||||||||| | ||||||||| |||||    
T  8439225 aatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggca 8439126  T
Q  101 atagcaggtccattactcactggaattgcagc 132  Q
    || ||||| ||||| ||||| |||||||||||    
T  8439125 attgcagggccattgctcacaggaattgcagc 8439094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8395561 - 8395692
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |||||| | ||||||||| |||||    
T  8395561 aatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggca 8395660  T
Q  101 atagcaggtccattactcactggaattgcagc 132  Q
    || ||||| ||||| ||||| |||||||||||    
T  8395661 attgcagggccattgctcacaggaattgcagc 8395692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8406011 - 8405880
Alignment:
Q  1 aatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggca 100  Q
    ||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |||||| | ||||||||| |||||    
T  8406011 aatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggca 8405912  T
Q  101 atagcaggtccattactcactggaattgcagc 132  Q
    || ||||| ||||| ||||| |||||||||||    
T  8405911 attgcagggccattgctcacaggaattgcagc 8405880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 8412083 - 8411976
Alignment:
Q  46 tgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgca 145  Q
    |||||| ||||| ||||||||||| ||||| |||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||||||||| || ||| ||    
T  8412083 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8411984  T
Q  146 tttgtagg 153  Q
    ||||||||    
T  8411983 tttgtagg 8411976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 8434181 - 8434074
Alignment:
Q  46 tgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgca 145  Q
    |||||| ||||| ||||||||||| ||||| |||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||||||||| || ||| ||    
T  8434181 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8434082  T
Q  146 tttgtagg 153  Q
    ||||||||    
T  8434081 tttgtagg 8434074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 8417301 - 8417212
Alignment:
Q  46 tgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaat 135  Q
    |||||| ||||| ||||||||||| ||||| |||||| | ||||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  8417301 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaat 8417212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 8404048 - 8403959
Alignment:
Q  5 gaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagt 94  Q
    ||||||| ||| || |||||||| || ||||| ||||| ||||| || ||||||||| | || ||||| ||||| |||||||||||||||    
T  8404048 gaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagt 8403959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 8405811 - 8405754
Alignment:
Q  204 tggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||| ||||||||||  |||||| ||||||||||||||||| ||||| ||||||||    
T  8405811 tggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaat 8405754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 8417197 - 8417081
Alignment:
Q  13 ggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtcca 112  Q
    ||||||| |||||||  ||||||| |||||   |||||| ||| | || |||||||| ||||| |||||| |  |||||||| | ||||| ||||| |||    
T  8417197 ggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggcca 8417098  T
Q  113 ttactcactggaattgc 129  Q
    |||||||| ||||||||    
T  8417097 ttactcacaggaattgc 8417081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 8403836 - 8403801
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttga 258  Q
    |||||||||||| |||||||||||||||||||||||    
T  8403836 ttttgagcatggaggacaagttggtatggtgtttga 8403801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8368163 - 8368125
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8368163 ttttgagcatggtggacaagttggtatggtttctgaaat 8368125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 8376094 - 8376132
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8376094 ttttgagcatggtggacaagttggcatggtttttgaaat 8376132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 8401247 - 8401285
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8401247 ttttgagcatggtggacaagttggtatggtttctgaaat 8401285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8411912 - 8411874
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8411912 ttttgagcatggtggacaagttggcatggtttttgaaat 8411874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8416993 - 8416955
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8416993 ttttgagcatggtggacaagttggcatggtttttgaaat 8416955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 8422824 - 8422862
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  8422824 ttttgagcatggtggacaagttggtatggtttctgaaat 8422862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8431063 - 8431025
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8431063 ttttgagcatggtggacaagttggcatggtttttgaaat 8431025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 8434010 - 8433972
Alignment:
Q  223 ttttgagcatggtggacaagttggtatggtgtttgaaat 261  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8434010 ttttgagcatggtggacaagttggcatggtttttgaaat 8433972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University