View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2894_low_1 (Length: 412)
Name: NF2894_low_1
Description: NF2894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2894_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 167 - 328
Target Start/End: Original strand, 55075953 - 55076125
Alignment:
| Q |
167 |
ttatataatgtctggatcaaaatacgtgtaacacagtcatacatacctaattagcattagaaatgactcttgaaaacgaaattggataaacattgtgatc |
266 |
Q |
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| T |
55075953 |
ttatataatgtctggatcaaaatacgtgtaacacagtcatacatacctaattagcattagaaatcactcttgaaaacgaaattggataaacattgagatc |
55076052 |
T |
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| Q |
267 |
-----------catacataccagccataattcccgcgttataaattcaccaaaaactcattcttgcacataaa |
328 |
Q |
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| T |
55076053 |
catataagatacatacatcccagccataattcccgcgttataaattcaccaaaaactcactcttgcacataaa |
55076125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 55076127 - 55076161
Alignment:
| Q |
360 |
ttctccaatggagcacactgatctttccaccaata |
394 |
Q |
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| T |
55076127 |
ttctccaatggagcacactgatctttccaccaata |
55076161 |
T |
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