View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2894_low_2 (Length: 239)
Name: NF2894_low_2
Description: NF2894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2894_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54040373 - 54040585
Alignment:
| Q |
1 |
caatcaacatcaagaacataaaaccccaaacataaatcacatgcaagttcgaatttttataataacccagcaaataaaacaacatcaagaacataaattg |
100 |
Q |
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| T |
54040373 |
caatcaacatcaagaacataaaaccccaaacataaatcacatgcaagttcgaattttgataataacccagcaaataaaacaaca---------taaattg |
54040463 |
T |
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| Q |
101 |
aataaacaaagataaaaagaaactaacctgaagagcattcaagtgctggaggtagaatttatcagcagtatcattgagaaattgggaatgaaagtcaatg |
200 |
Q |
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| T |
54040464 |
aataaagaaagataaaaagaaactaacctgaagagcattcaagtgctggaggtagaatttatcagcagtatcattgagaaattgggaatgaaagtcaatg |
54040563 |
T |
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| Q |
201 |
caaacttttccagattgcaaac |
222 |
Q |
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|||| ||||||||||||||||| |
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| T |
54040564 |
caaagttttccagattgcaaac |
54040585 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 3484541 - 3484489
Alignment:
| Q |
169 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
222 |
Q |
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| T |
3484541 |
tatcattgagaaattgggaatgaaattcaaagcaaacttgtcca-attgcaaac |
3484489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 41779202 - 41779254
Alignment:
| Q |
169 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
222 |
Q |
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| T |
41779202 |
tatcattgagaaattgggaatgaaattcaaagcaaacttgtcca-attgcaaac |
41779254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 3276645 - 3276697
Alignment:
| Q |
169 |
tatcattgagaaattgggaatgaaagtcaatgcaaacttttccagattgcaaac |
222 |
Q |
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|||||||| |||||||||||||||| |||| |||||||| |||| ||||||||| |
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| T |
3276645 |
tatcattgtgaaattgggaatgaaattcaaagcaaacttatcca-attgcaaac |
3276697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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