View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2895_high_1 (Length: 310)
Name: NF2895_high_1
Description: NF2895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2895_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 39073746 - 39073455
Alignment:
| Q |
19 |
aggggacaataacaaagcactaggagttgtagaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattga |
118 |
Q |
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| T |
39073746 |
aggggacaataacaaagcactaggagttgtagaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattga |
39073647 |
T |
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| Q |
119 |
agcaacttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaa |
218 |
Q |
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| T |
39073646 |
agcaacttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaa |
39073547 |
T |
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| Q |
219 |
ggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggt |
310 |
Q |
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| T |
39073546 |
ggatacgaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggt |
39073455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 6259729 - 6259580
Alignment:
| Q |
130 |
ttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatc |
229 |
Q |
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| T |
6259729 |
ttgtttcttcaaaaacttcacataatgtattgcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatctttgtaatatccttatt |
6259630 |
T |
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| Q |
230 |
ttctcactgattctttctcttctatgtctagctgcaacactttgtggatc |
279 |
Q |
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| T |
6259629 |
ctttcactaattctttctcttctatgtcttgctgctacactttgtggatc |
6259580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 46899443 - 46899304
Alignment:
| Q |
142 |
aaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgatt |
241 |
Q |
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| T |
46899443 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttatt |
46899344 |
T |
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| Q |
242 |
ctttctcttctatgtctagctgcaacactttgtggatctt |
281 |
Q |
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| T |
46899343 |
ctttctcttctgtgtctagctgctatactctgaggatctt |
46899304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 25645275 - 25645321
Alignment:
| Q |
233 |
tcactgattctttctcttctatgtctagctgcaacactttgtggatc |
279 |
Q |
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| T |
25645275 |
tcactgattctatgtcttctttctctagctgcaacactttgtggatc |
25645321 |
T |
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