View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2895_low_2 (Length: 262)
Name: NF2895_low_2
Description: NF2895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2895_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9439767 - 9440027
Alignment:
| Q |
1 |
catgacccatatctaaccatggtttgaagtcttgattaagtaaatggaacttggaaataatcaatcgggttagca----------------atgctcttt |
84 |
Q |
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| T |
9439767 |
catgacccatatctaaccatggtttgaagtcttgattaagtaaatggaacttggaaataatcaatcggtttagcagctaaatgtacaagaaatgctcttt |
9439866 |
T |
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| Q |
85 |
ttgagcttcaaatgctagctagaactcaataccttatttnnnnnnnnnntaaataaatcataacataaagacaatgaacgaggtaaagataagtgcacta |
184 |
Q |
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| T |
9439867 |
ttgagcttcaaatgctagctagaactcaataccttatttaaaaataaaaataaaaaatcataacataaagacaatgaacgaggtaaagataagtgcacta |
9439966 |
T |
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| Q |
185 |
caaatctacaactatctcttactcctaatgtatttttcaaattgataaaaagaatcaaaga |
245 |
Q |
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| T |
9439967 |
caaatctacaactatctcttactcctaatgtatttttcaaattgataaaaagaatcaaaga |
9440027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 9356633 - 9356693
Alignment:
| Q |
169 |
aaagataagtgcactacaaatctacaactatctcttactcctaatgtatttttcaaattga |
229 |
Q |
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| T |
9356633 |
aaagataagtgcactacaggtctacaactatctcttactcctaatgtattttgcaaattga |
9356693 |
T |
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