View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2896_high_1 (Length: 486)
Name: NF2896_high_1
Description: NF2896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2896_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 78 - 437
Target Start/End: Complemental strand, 51811064 - 51810705
Alignment:
| Q |
78 |
acaccaaacatgatttttgaagtttgtgcccctcctaataacaccctttcatgataaatcttgtgacaaaattagaataagaaaatagacggtgtaacct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51811064 |
acaccaaacatgatttttgaagtttgtgcccctcctaataacaccctttcatgataaatcttgtgacaaaattagaataagaaaatagacggtgtaacct |
51810965 |
T |
|
| Q |
178 |
cttgaatggtaactctctcccaagtttttcatatatcagtgagacttttcttcacaatttgaacccttatgtgtttgcaagtcgtaaacttataaataag |
277 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51810964 |
cttgaatagtaactctctcccaagtttttcatataccagtgagacttttcttcacaatttgaacccttatgtgtttgtaagtcgtaaacttataaataag |
51810865 |
T |
|
| Q |
278 |
aaaagaaaagcctagtatgacccaagaaagtcaacacgatcgaacgatgatgaaggaaaaaggttagcatgagagcaaagggttcgaggagaatttggtc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51810864 |
aaaagaaaagcctagtatgacccaagaaagtcaacacgatcgaacgatgatgaaggaaaaaggttagcatgagagcaaagggttcgaggagaatttggtc |
51810765 |
T |
|
| Q |
378 |
ttcaagttatagaacgagaaaagatctattatttacattgtcatttaataaaaatacatc |
437 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
51810764 |
ttcaagttatagaacgagaaaagatatattatttacattgtcatataataaaaatacatc |
51810705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University