View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2896_low_3 (Length: 372)

Name: NF2896_low_3
Description: NF2896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2896_low_3
NF2896_low_3
[»] chr2 (9 HSPs)
chr2 (52-259)||(32276075-32276288)
chr2 (120-259)||(32302680-32302819)
chr2 (183-259)||(32295075-32295150)
chr2 (325-364)||(32302881-32302920)
chr2 (183-255)||(22139326-22139397)
chr2 (183-258)||(32241460-32241532)
chr2 (327-364)||(32295208-32295245)
chr2 (148-184)||(32241554-32241590)
chr2 (148-184)||(32295017-32295053)
[»] scaffold1678 (1 HSPs)
scaffold1678 (183-259)||(1090-1165)
[»] scaffold0786 (1 HSPs)
scaffold0786 (183-255)||(3335-3406)
[»] scaffold0390 (2 HSPs)
scaffold0390 (183-255)||(1867-1938)
scaffold0390 (183-255)||(14851-14922)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 32276075 - 32276288
Alignment:
Q  52 gacacacaaaggtgatgaaataaactataatgctaattccatacaagggctaaattttttgtgacccttg------attcaattagaggtcattaagaaa 145  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||| |  || ||||      |||| |||||||||| ||||| ||    
T  32276075 gacaaacaaaggtgatgaaataaagtataatgctaatttcatgcaaaggctaaatttttggcaacacttgcgattgattccattagaggtcgttaaggaa 32276174  T
Q  146 ccgagcaagtctttctcattccaaatatagcaaagtccaaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgttt 245  Q
    | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  32276175 ctgaccaagtctttctcattccaaatatagcaaactccaaacgattggatcaaggctcttgcatgctcctatataaagacttggtagtatcacattgttt 32276274  T
Q  246 ttcatcacaagggg 259  Q
    ||||||||||||||    
T  32276275 ttcatcacaagggg 32276288  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 32302680 - 32302819
Alignment:
Q  120 tgattcaattagaggtcattaagaaaccgagcaagtctttctcattccaaatatagcaaagtccaaacgattggatcaaggctcttgcatgcttctatat 219  Q
    ||||||||||||||||| ||||| || | ||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  32302680 tgattcaattagaggtctttaaggaatcaagcaagtttttctcattccaaatatagcaaactccaaacgattggaccaaagctcttgcatgctcctatat 32302779  T
Q  220 aaagacttagtagtatcccattgtttttcatcacaagggg 259  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  32302780 aaagacttggtagtatcccattgtttttcatcacaagggg 32302819  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 32295075 - 32295150
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaagggg 259  Q
    |||||||||||| ||||  | ||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||    
T  32295075 caaacgattggaccaagattattgcatgctcctatataa-gacttggtaatatcccattgtttttcatcacaagggg 32295150  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 32302881 - 32302920
Alignment:
Q  325 ggcaaggtcattttttgtcgttgctctcattgtctctgct 364  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32302881 ggcaaggtcattttctgtcgttgctctcattgtctctgct 32302920  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 22139397 - 22139326
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 255  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  22139397 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 22139326  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 32241532 - 32241460
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaaggg 258  Q
    |||||||||||| ||||  | ||||||||| ||||||||    || |||||||| |||||||||||||||||||||    
T  32241532 caaacgattggaccaagattattgcatgctcctatataag---ttggtagtatcacattgtttttcatcacaaggg 32241460  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 32295208 - 32295245
Alignment:
Q  327 caaggtcattttttgtcgttgctctcattgtctctgct 364  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  32295208 caaggtcatttgttgtcgttgctctcattgtttctgct 32295245  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 32241590 - 32241554
Alignment:
Q  148 gagcaagtctttctcattccaaatatagcaaagtcca 184  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32241590 gagcaagtctttctcattccaaatataacaaactcca 32241554  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 32295017 - 32295053
Alignment:
Q  148 gagcaagtctttctcattccaaatatagcaaagtcca 184  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  32295017 gagcaagtctttctcattccaaatataacaaaatcca 32295053  T

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Target: scaffold1678 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 1165 - 1090
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaagggg 259  Q
    |||||||||||| ||||  ||||||||||| ||| |||| ||||| |||||||| ||||||||||||| ||||||||    
T  1165 caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 1090  T

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Target: scaffold0786 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 3335 - 3406
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 255  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  3335 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 3406  T

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Target: scaffold0390 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 1867 - 1938
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 255  Q
    |||||||||||| ||||  | ||||||||| |||||||| | ||| |||||||| ||||||||||||||||||    
T  1867 caaacgattggaccaagattattgcatgctcctatataa-gtcttggtagtatcacattgtttttcatcacaa 1938  T

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Target: scaffold0390; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 14851 - 14922
Alignment:
Q  183 caaacgattggatcaaggctcttgcatgcttctatataaagacttagtagtatcccattgtttttcatcacaa 255  Q
    |||||||||||| ||||  | ||||||||| |||||| ||| ||| |||||||  ||||||||||||||||||    
T  14851 caaacgattggaccaagattattgcatgctcctatat-aagtcttggtagtatgacattgtttttcatcacaa 14922  T

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