View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2897_low_1 (Length: 695)

Name: NF2897_low_1
Description: NF2897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2897_low_1
NF2897_low_1
[»] chr8 (10 HSPs)
chr8 (162-403)||(34741975-34742216)
chr8 (18-167)||(34742302-34742451)
chr8 (458-551)||(19430733-19430826)
chr8 (458-551)||(19436175-19436268)
chr8 (458-551)||(19566882-19566975)
chr8 (458-551)||(19572324-19572417)
chr8 (458-551)||(31031256-31031349)
chr8 (458-551)||(33616064-33616157)
chr8 (458-551)||(13584870-13584968)
chr8 (57-119)||(34751817-34751879)
[»] scaffold0132 (2 HSPs)
scaffold0132 (458-677)||(2295-2514)
scaffold0132 (458-677)||(10255-10474)
[»] chr3 (7 HSPs)
chr3 (458-557)||(13022749-13022848)
chr3 (458-556)||(53120221-53120319)
chr3 (458-551)||(33088616-33088709)
chr3 (458-551)||(38436270-38436363)
chr3 (458-523)||(20811112-20811177)
chr3 (485-551)||(26929433-26929498)
chr3 (458-551)||(11777274-11777360)
[»] chr6 (6 HSPs)
chr6 (458-551)||(19478838-19478931)
chr6 (458-551)||(17289607-17289697)
chr6 (458-552)||(14450600-14450689)
chr6 (458-551)||(10485799-10485890)
chr6 (465-548)||(17280865-17280943)
chr6 (458-552)||(29326296-29326384)
[»] chr2 (3 HSPs)
chr2 (458-551)||(42915263-42915356)
chr2 (458-551)||(5089778-5089872)
chr2 (459-551)||(39959865-39959952)
[»] chr1 (11 HSPs)
chr1 (458-552)||(26650427-26650521)
chr1 (461-551)||(38734829-38734919)
chr1 (458-551)||(5602170-5602263)
chr1 (458-551)||(13891505-13891598)
chr1 (458-551)||(14582448-14582541)
chr1 (465-551)||(39746674-39746760)
chr1 (458-551)||(31289455-31289547)
chr1 (458-556)||(10106741-10106840)
chr1 (458-551)||(12179406-12179494)
chr1 (66-119)||(11980881-11980934)
chr1 (227-308)||(11954460-11954541)
[»] chr7 (8 HSPs)
chr7 (458-551)||(9973969-9974062)
chr7 (458-552)||(24529090-24529184)
chr7 (461-556)||(28291837-28291932)
chr7 (458-551)||(33227019-33227113)
chr7 (461-551)||(7358037-7358127)
chr7 (493-551)||(10437398-10437456)
chr7 (493-551)||(10451108-10451166)
chr7 (485-551)||(47762433-47762497)
[»] chr4 (4 HSPs)
chr4 (458-551)||(10119806-10119899)
chr4 (458-551)||(653688-653782)
chr4 (461-551)||(24490797-24490882)
chr4 (485-552)||(8082772-8082837)
[»] scaffold0011 (2 HSPs)
scaffold0011 (458-551)||(2326-2420)
scaffold0011 (458-551)||(7580-7674)
[»] chr5 (3 HSPs)
chr5 (458-551)||(13581981-13582075)
chr5 (458-551)||(14374824-14374917)
chr5 (458-551)||(7805773-7805867)
[»] scaffold0067 (1 HSPs)
scaffold0067 (458-551)||(33305-33392)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 162 - 403
Target Start/End: Complemental strand, 34742216 - 34741975
Alignment:
Q  162 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaattaattttaagtcagatgatagcaatggcgttgggatcaag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  34742216 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaatt----ttaagtcagatgatagcaatggcgttgggatcaag 34742121  T
Q  262 tggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 361  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742120 tggtgtgcccaaaccccagttgacattttggaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 34742021  T
Q  362 tagaaaagcc----tagcagctcaatacttgcaggtatctgtccaa 403  Q
    ||||||||||    ||||||||||||||||||||||||||||||||    
T  34742020 tagaaaagcctagctagcagctcaatacttgcaggtatctgtccaa 34741975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 34742451 - 34742302
Alignment:
Q  18 cagtaccatatagcttcttgttacacagttttataccatatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcat 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742451 cagtaccatatagcttcttgttacacagttttattccatatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcat 34742352  T
Q  118 atcattataacatgatttcaagtataacatgatcaaacctttgtctccca 167  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34742351 atcattataacatgatttcaagtataacatgatcaaacatttgtctccca 34742302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 19430733 - 19430826
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  19430733 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 19436175 - 19436268
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  19436175 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 19566882 - 19566975
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  19566882 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19566975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 19572324 - 19572417
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  19572324 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 31031256 - 31031349
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||| ||||||||||||||||    
T  31031256 atgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttcttatccaattttctcattagatttaactagtgttccaaca 31031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 33616157 - 33616064
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||| ||||||||||    
T  33616157 atgtgagacatttttaagccacatactcacactagttcttatattgtatttttcttatccaattttctcactagatttaactaatgttccaaca 33616064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 13584870 - 13584968
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttttt-----ctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||||||     || |||||||||| |||||||||| ||||||||||||||||    
T  13584870 atgtgggacatttttaaatcacacgctcacactaattcttatattgtgttttttttttcttatccaattttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 34751879 - 34751817
Alignment:
Q  57 atggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 119  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34751879 atggcacaaaaaccttcagccattccctagttgctatgttgtaagtaaacatatgatacatat 34751817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 458 - 677
Target Start/End: Complemental strand, 2514 - 2295
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacacaaact 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2514 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagattcaactagtgttccaacacaaact 2415  T
Q  558 tattagttattatatgtattcttactannnnnnnccttgggtgtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacag 657  Q
    |||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2414 tattagttattatatgtattgttactatttttttccttgggtgtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacag 2315  T
Q  658 ttttgtgttttcctggatat 677  Q
    ||||||||||||||||||||    
T  2314 ttttgtgttttcctggatat 2295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 458 - 677
Target Start/End: Complemental strand, 10474 - 10255
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacacaaact 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  10474 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagattcaactagtgttccaacacaaact 10375  T
Q  558 tattagttattatatgtattcttactannnnnnnccttgggtgtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacag 657  Q
    |||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10374 tattagttattatatgtattgttactatttttttccttgggtgtgtggtgtttaccggctgttcttgtggtttcatctttggagcggttttttgttacag 10275  T
Q  658 ttttgtgttttcctggatat 677  Q
    ||||||||||||||||||||    
T  10274 ttttgtgttttcctggatat 10255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 458 - 557
Target Start/End: Original strand, 13022749 - 13022848
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacacaaact 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  13022749 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaacacaaact 13022848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 458 - 556
Target Start/End: Original strand, 53120221 - 53120319
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacacaaac 556  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  53120221 atgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatccaattttctcactagatttaactagtgttccaacacaaac 53120319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 33088709 - 33088616
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  33088709 atgtgggacatttttaagtcacacactcacactagttcttacattatgtttttcttatccaattttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 38436363 - 38436270
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||| ||| |||||||    
T  38436363 atgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttcttatccaattttctcactagatttaactggtgctccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 20811112 - 20811177
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaatttt 523  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  20811112 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 551
Target Start/End: Original strand, 26929433 - 26929498
Alignment:
Q  485 cacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||| ||| ||||||||| |||||||||| | |||||| | ||||| ||||||||||    
T  26929433 cacactagttcttacattatgtttttct-atccaattttttgactagaattaactaatgttccaaca 26929498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 11777274 - 11777360
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||    ||||||||||||||   ||||||||||| |||||| ||   ||||||| ||||| ||||||||||||    
T  11777274 atgtgggacatttttaagtcaca----cacactagttcttaccatgtgtttttct-atccaactt--ccactagaatcaacgagtgttccaaca 11777360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 19478838 - 19478931
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  19478838 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 17289697 - 17289607
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  17289697 atgtgggacatttttaagtcacacac--acactagttcttacattgtgtttttct-atccaattttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 14450689 - 14450600
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacac 552  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||     |||| |||||||||||||||||||||    
T  14450689 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt-----actacattcaactagtgttccaacac 14450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 10485799 - 10485890
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaa-ttttgtcactagattcaactagtgttccaaca 551  Q
    |||||| ||||||||||||| |||||  ||||||||||||| ||||||||||||| |||||| |||| |||||||||| ||||||| ||||||||    
T  10485799 atgtggaacatttttaagtctcacac--acactagttcttacattgtgtttttct-atccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 548
Target Start/End: Complemental strand, 17280943 - 17280865
Alignment:
Q  465 acatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttcca 548  Q
    |||||||||||||||||||    ||||||||||| ||| | ||||||| |||||||||| |||||||||||||||| |||||||    
T  17280943 acatttttaagtcacacac----actagttcttacattctatttttct-atccaattttctcactagattcaactaatgttcca 17280865  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 29326296 - 29326384
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacac 552  Q
    ||||| |||||||||||||||| |||    |||| |||||| || |||||||||| |||||| ||| |||||||| | |||||||||||||||||    
T  29326296 atgtgagacatttttaagtcacgcac----actaattcttacatagtgtttttct-atccaacttt-tcactagaattaactagtgttccaacac 29326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 42915263 - 42915356
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42915263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 5089778 - 5089872
Alignment:
Q  458 atgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  5089778 atgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 551
Target Start/End: Original strand, 39959865 - 39959952
Alignment:
Q  459 tgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||| |||||||||||    | ||||||||||||||| ||||||| |||||| ||| |||||||||| ||||| ||||||||||    
T  39959865 tgtgggacattttttaagtcacacac----aatagttcttatattgtatttttct-atccaacttt-tcactagatttaactactgttccaaca 39959952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 26650521 - 26650427
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacac 552  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  26650521 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagatttaactagtgttccaacac 26650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 38734829 - 38734919
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  38734829 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 5602263 - 5602170
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  5602263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 13891505 - 13891598
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  13891505 atgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 14582448 - 14582541
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  14582448 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 39746760 - 39746674
Alignment:
Q  465 acatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  39746760 acatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 39746674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 31289455 - 31289547
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  31289455 atgtgggacatttttaagtcacacactcacactagttcttacattgtg-ttttcttatccaattttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 556
Target Start/End: Original strand, 10106741 - 10106840
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgt-gtttttctgatccaattttgtcactagattcaactagtgttccaacacaaac 556  Q
    |||||||||||||||||||||||||  ||||||||||| ||| | ||  || |||| |  ||||||| |||||||||| |||||||||||||||| ||||    
T  10106741 atgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattattctcaatcaattttctcactagattgaactagtgttccaacataaac 10106840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 12179406 - 12179494
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||| ||| |||||||||||||||||    ||||||||||| ||||||||||||| |||||||||| | |||||| | |||||| |||||||||    
T  12179406 atgtaggatatttttaagtcacacac----actagttcttacattgtgtttttct-atccaatttttttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 11980934 - 11980881
Alignment:
Q  66 gaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 119  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  11980934 gaaccgtcaaccattccctagttgctatgttgtaaataatcatacgatacatat 11980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 11954541 - 11954460
Alignment:
Q  227 ttaagtcagatgatagcaatggcgttgggatcaagtggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttc 308  Q
    |||||||||||||  |||| |||  | |||||||||| |||| |||||||||||||||||| |  ||||||  |||||||||    
T  11954541 ttaagtcagatgaatgcaacggcacttggatcaagtgttgtgtccaaaccccagttgacgtatcacaagaactaatcccttc 11954460  T

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Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 9973969 - 9974062
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9973969 atgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 24529090 - 24529184
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacac 552  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  24529090 atgtaggatatttttaagtcacacactcacactagttcttatattatgtttttcttatccaattttctcactagatttaactagtgttccaacac 24529184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 461 - 556
Target Start/End: Complemental strand, 28291932 - 28291837
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacacaaac 556  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | | |||||| |||||||||||||||| ||||    
T  28291932 tgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatccaattttctaattagatttaactagtgttccaacagaaac 28291837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 33227019 - 33227113
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttttt-ctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||| ||||||||||||||||    
T  33227019 atgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttccttatccaattttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 7358037 - 7358127
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||| |||  ||||||||||||||||||||||    
T  7358037 tgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttcttatccaattttctcaaaagattcaactagtgttccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  493 ttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  493 ttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 551
Target Start/End: Original strand, 47762433 - 47762497
Alignment:
Q  485 cacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||| ||||||||||||| || ||||||| |||||||| | | ||||||||||||||    
T  47762433 cacactagttcttacattgtgtttttct-attcaatttt-tcactagacttagctagtgttccaaca 47762497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 10119899 - 10119806
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  10119899 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaattttctcacgagattcaactagtgttccaaca 10119806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 653688 - 653782
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttt-ttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||||||||||||||    
T  653688 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaattttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 24490797 - 24490882
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||| ||||||    ||||||||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  24490797 tgggacatttttaagttacacac----actagttcttacattgtgtttttct-atccaattttctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 8082837 - 8082772
Alignment:
Q  485 cacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaacac 552  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||| | |||||||||||||||||    
T  8082837 cacactagttcttacatagtgtttttct-atccaacttt-tcactagaattaactagtgttccaacac 8082772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 2326 - 2420
Alignment:
Q  458 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  2326 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 7580 - 7674
Alignment:
Q  458 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  7580 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 13582075 - 13581981
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttt-ttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||||||||||||||    
T  13582075 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaattttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 14374824 - 14374917
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttctta-tattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||||  |||||||||||||| || ||  || |||| ||||||  || |||||||||| ||||||||||||||||    
T  14374824 atgtgggacatttttaagtcacacaaccacactagttcttagtagtg-cttattctcatccaaacttctcactagattgaactagtgttccaaca 14374917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 551
Target Start/End: Original strand, 7805773 - 7805867
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgt-gtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||||  ||||||||||| ||| | ||  || | || |  ||||||| |||||||||| ||||||||||||||||    
T  7805773 atgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattatcctcaatcaattttctcactagattgaactagtgttccaaca 7805867  T

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Target: scaffold0067 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 33392 - 33305
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttctgatccaattttgtcactagattcaactagtgttccaaca 551  Q
    |||||||||||||||||||||||    |||||||||||||| ||||||||||||| |||||||||| |||||||| | ||||||| ||||||||    
T  33392 atgtgggacatttttaagtcaca----cacactagttcttacattgtgtttttct-atccaatttt-tcactagaattaactagtattccaaca 33305  T

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