View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2897_low_3 (Length: 653)
Name: NF2897_low_3
Description: NF2897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2897_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 50 - 653
Target Start/End: Original strand, 2063701 - 2064301
Alignment:
| Q |
50 |
tgttagatcttttaaagaaaaacttcatcatcgagtatgatagaatctagattgaagtagagatttttagtnnnnnnncataatcataaccatggtgtat |
149 |
Q |
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| T |
2063701 |
tgttacatcttttaaagaaaaattttatcatcgagtatgatagaatctagtttgaagtagagatttctagtaa------aaaaacataatcatggtgtat |
2063794 |
T |
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| Q |
150 |
tataattggcaagaaagaatacaaactacta---aaaacaaccc-ataatatttttgtatagagaaagnnnnnnnnttatccataattggtgcgcctttt |
245 |
Q |
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| T |
2063795 |
tataattggcaagaaagaatacaaactactactaaaaacaaccccataatatttttgtatagagagaaaaaaaaaattatccataattggtgcgtctttt |
2063894 |
T |
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| Q |
246 |
tacaagatccaatattataattccttgtatcatttcatctaatttaacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
345 |
Q |
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| T |
2063895 |
tacaagatccaatattataattccttgtatcttttcatctaatt-aacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactca |
2063993 |
T |
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| Q |
346 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattnnnnnnnnnnnnnttata |
445 |
Q |
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| T |
2063994 |
tttgcattaattttgttctaaagcctcaaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattaaaaataaaaaaattata |
2064093 |
T |
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| Q |
446 |
tcgaaatttataaacctaaatgttaatgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatttcttcaccaattctgttaccttca |
545 |
Q |
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| T |
2064094 |
tcgaaatttataaacctaaatgttaatgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatctcttcaccaattctgttaccttca |
2064193 |
T |
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| Q |
546 |
acgtcataatcaaccggttcaattctgcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccg |
645 |
Q |
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| T |
2064194 |
acgtcataatcaaccggttcaattctgcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccg |
2064293 |
T |
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| Q |
646 |
atagtctg |
653 |
Q |
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| T |
2064294 |
atagtctg |
2064301 |
T |
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