View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2897_low_5 (Length: 415)

Name: NF2897_low_5
Description: NF2897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2897_low_5
NF2897_low_5
[»] chr6 (12 HSPs)
chr6 (168-311)||(10793504-10793647)
chr6 (168-311)||(10792483-10792626)
chr6 (168-311)||(7001698-7001841)
chr6 (168-296)||(8238069-8238197)
chr6 (198-310)||(8238796-8238908)
chr6 (168-263)||(19237576-19237671)
chr6 (168-244)||(5860550-5860626)
chr6 (168-244)||(25359499-25359574)
chr6 (168-291)||(29374988-29375111)
chr6 (168-240)||(17280695-17280767)
chr6 (191-245)||(17279907-17279961)
chr6 (168-245)||(8683848-8683924)
[»] chr1 (10 HSPs)
chr1 (168-311)||(34267976-34268119)
chr1 (168-311)||(34269009-34269152)
chr1 (168-259)||(34275296-34275387)
chr1 (168-286)||(24790800-24790918)
chr1 (168-272)||(17239370-17239474)
chr1 (168-272)||(17238597-17238701)
chr1 (168-261)||(16801973-16802066)
chr1 (168-240)||(42026896-42026968)
chr1 (168-240)||(42031689-42031761)
chr1 (168-291)||(16802627-16802750)
[»] chr7 (8 HSPs)
chr7 (200-311)||(7834866-7834977)
chr7 (168-291)||(45551750-45551873)
chr7 (168-240)||(5995253-5995325)
chr7 (168-247)||(45550998-45551077)
chr7 (168-260)||(27268218-27268310)
chr7 (168-260)||(41970888-41970980)
chr7 (168-291)||(27258054-27258176)
chr7 (168-236)||(5997611-5997679)
[»] chr4 (23 HSPs)
chr4 (171-308)||(11792246-11792383)
chr4 (168-278)||(11791361-11791471)
chr4 (168-311)||(34837896-34838039)
chr4 (191-296)||(34836773-34836878)
chr4 (191-296)||(34978367-34978472)
chr4 (168-290)||(20627527-20627649)
chr4 (168-290)||(31135170-31135292)
chr4 (168-242)||(31135892-31135966)
chr4 (168-235)||(12921863-12921930)
chr4 (168-262)||(31914523-31914617)
chr4 (168-240)||(12206764-12206836)
chr4 (168-291)||(23089215-23089338)
chr4 (168-245)||(12921129-12921205)
chr4 (168-236)||(6311784-6311852)
chr4 (191-235)||(42523225-42523269)
chr4 (191-286)||(20628289-20628383)
chr4 (168-291)||(23088276-23088399)
chr4 (168-231)||(48314367-48314430)
chr4 (172-236)||(6310823-6310887)
chr4 (168-240)||(12210914-12210986)
chr4 (168-240)||(31689177-31689249)
chr4 (168-232)||(31908357-31908421)
chr4 (191-291)||(54501587-54501687)
[»] chr2 (9 HSPs)
chr2 (168-308)||(45631067-45631207)
chr2 (168-253)||(16591509-16591594)
chr2 (168-259)||(18767546-18767637)
chr2 (168-245)||(9243994-9244070)
chr2 (191-272)||(29558175-29558255)
chr2 (191-262)||(9244267-9244338)
chr2 (163-241)||(18237618-18237696)
chr2 (168-241)||(18236657-18236730)
chr2 (250-291)||(45630275-45630316)
[»] chr8 (11 HSPs)
chr8 (168-290)||(30971954-30972074)
chr8 (168-291)||(1636848-1636971)
chr8 (191-296)||(28965798-28965903)
chr8 (168-245)||(30971285-30971362)
chr8 (168-272)||(5152417-5152521)
chr8 (168-240)||(16106020-16106092)
chr8 (168-240)||(16113260-16113332)
chr8 (189-235)||(1637573-1637619)
chr8 (168-226)||(23220008-23220066)
chr8 (191-228)||(32744033-32744070)
chr8 (168-240)||(16101523-16101595)
[»] chr5 (2 HSPs)
chr5 (168-260)||(33471165-33471257)
chr5 (168-235)||(33471854-33471921)
[»] chr3 (13 HSPs)
chr3 (168-262)||(4300933-4301027)
chr3 (168-311)||(40929781-40929925)
chr3 (168-240)||(54285811-54285883)
chr3 (168-245)||(2841198-2841274)
chr3 (168-241)||(27473857-27473930)
chr3 (168-235)||(14460134-14460201)
chr3 (168-241)||(27474875-27474948)
chr3 (168-261)||(33148274-33148367)
chr3 (168-236)||(27317475-27317543)
chr3 (168-228)||(27359843-27359903)
chr3 (170-240)||(17619140-17619210)
chr3 (168-228)||(28422853-28422913)
chr3 (168-236)||(33147332-33147400)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 10793647 - 10793504
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10793647 tttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaaaacccttgcttttattttttgggcaaa 10793548  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  10793547 ttaaatataaagggcacaaatgtactttttgtttaaatgttaga 10793504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 10792483 - 10792626
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  10792483 tttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagacccttgtttttattttttggacaaa 10792582  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    ||||||   ||||||||||||||  |||  ||||||| ||||||    
T  10792583 ttaaatcagaagggcacaaatgttatttccgtttaaaggttaga 10792626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 7001841 - 7001698
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||| ||||||| ||||  ||||||||||||||||||| ||||| |||||||||||||| ||||||||||  ||||||| |||| |||||||| ||||    
T  7001841 tttgctgcaatagacccacttcattttatgaaggtctattttagcatgcaacaccttttcacttggacacaatgacccttgtttttgttttttggacaaa 7001742  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    |||||| ||||||| ||||||||| |||  ||||||| ||||||    
T  7001741 ttaaatctaaagggaacaaatgtaatttccgtttaaaggttaga 7001698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 296
Target Start/End: Original strand, 8238069 - 8238197
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    ||||||||||||||  ||| |  ||||||||| |||||||||| ||| ||||||||||||| |||||| |||||||| ||  |||| ||||||| |||||    
T  8238069 tttgctacaatagactcactcatttttatgaaagtctattctatcaaccaacaccttttcaattggacccaaaaacctttatttttgttttttgagcaaa 8238168  T
Q  268 ttaaatgtaaagggcacaaatgtactttt 296  Q
    |||||  ||||||||||||||||| ||||    
T  8238169 ttaaaactaaagggcacaaatgtaatttt 8238197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 8238908 - 8238796
Alignment:
Q  198 aaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgtacttttt 297  Q
    ||||| |||| |||||| |||||  |||||| ||||||||||||||||||  |||| ||||||| ||||||||||  ||||||||||||||||| ||||     
T  8238908 aaggtttattttagcaaccaacattttttcaattggacacaaaaacccttatttttgttttttgagcaaattaaaattaaagggcacaaatgtaatttta 8238809  T
Q  298 gtttaaatgttag 310  Q
     |||||| |||||    
T  8238808 atttaaaagttag 8238796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 19237671 - 19237576
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttggg 263  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||    
T  19237671 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcacttggacataaagacccttgtttttgttttttggg 19237576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 5860550 - 5860626
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacc 244  Q
    |||||||||||||| |||| |  |||||||||||| |||| ||||||  ||||| |||||||||||||| |||||||    
T  5860550 tttgctacaatagacccactcatttttatgaaggtgtattttagcaacaaacacattttcatttggacaaaaaaacc 5860626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 25359499 - 25359574
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacc 244  Q
    ||||||||||||||  |||  ||||||||||| ||||||| |||||| ||||||||||| |||||||| ||||||||    
T  25359499 tttgctacaatagactcacttcattttatgaaagtctattttagcaaccaacacctttttatttggac-caaaaacc 25359574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 29375111 - 29374988
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    ||||||||||||||||||| |  ||| ||||||||| ||| ||||||| | |||||||||| ||||||| ||| | || || |||| |||||||  | ||    
T  29375111 tttgctacaatagatccactcattttcatgaaggtccattttagcaaggagcaccttttcacttggacaaaaatatccatgtttttgttttttgaaccaa 29375012  T
Q  268 ttaaatgtaaagggcacaaatgta 291  Q
    |||||  |||||| ||||| ||||    
T  29375011 ttaaaattaaaggacacaattgta 29374988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 17280767 - 17280695
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    ||||||||||| || |||| |  ||| || |||||||||| |||||| ||||||||||||| |||||||||||    
T  17280767 tttgctacaattgacccactcattttcattaaggtctattttagcaaccaacaccttttcacttggacacaaa 17280695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 17279907 - 17279961
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    ||||||||||||||||| |||||| || |||||||| | ||||||||||| ||||    
T  17279907 ttttatgaaggtctattttagcaaccagcacctttttacttggacacaaataccc 17279961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 8683924 - 8683848
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| ||||| ||||| ||||||||  ||||||||    
T  8683924 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacatctttt-atttggaccaaaaaaccc 8683848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 34267976 - 34268119
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34267976 tttgctacaatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaaaacccttgcttttattttttgggcaaa 34268075  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  34268076 ttaaatataaagggcacaaatgtactttttgtttaaatgttaga 34268119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 34269152 - 34269009
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  34269152 tttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagacccttgtttttattttttggacaaa 34269053  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    ||||||   ||||||||||||||  |||  ||||||| ||||||    
T  34269052 ttaaatcagaagggcacaaatgttatttccgtttaaaggttaga 34269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 34275387 - 34275296
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttt 259  Q
    |||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  34275387 tttgctacaatagacccattccattttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagacccttgtttttattttt 34275296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 24790918 - 24790800
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||| |  |||| |||||||||||||    
T  24790918 tttgctacaatagacccacttcattttatgaaggtctattttagaaagcaacactttttcacttggacacaaaaacccctatttttgttttttgggcaaa 24790819  T
Q  268 ttaaatgtaaagggcacaa 286  Q
    |||||| |||||| |||||    
T  24790818 ttaaatctaaaggacacaa 24790800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 17239474 - 17239370
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  ||||||||||||||||| ||||||| | |||||||||||||||||  |||||||| || |||| ||||||||| |||    
T  17239474 tttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcatttggaccaaaaaacccatgtttttgttttttgggaaaa 17239375  T
Q  268 ttaaa 272  Q
     ||||    
T  17239374 ctaaa 17239370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 17238597 - 17238701
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  ||||||||||||||||| ||||||| | ||||||||| |||||||  ||| |||| || |||| |||| |||| |||    
T  17238597 tttgctacaatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcgtttggaccaaaagacccatgtttttgttttctgggaaaa 17238696  T
Q  268 ttaaa 272  Q
     ||||    
T  17238697 ctaaa 17238701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 16801973 - 16802066
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttg 261  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||||   |||||||||| ||||||| ||| |||| || |||| |||||||    
T  16801973 tttgctacaatagacccactcattttcatgaaggtctattttagcaaggggcaccttttcacttggacaaaaatacccatgtttttgttttttg 16802066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 42026896 - 42026968
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  42026896 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 42026968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 42031761 - 42031689
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  42031761 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 42031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 16802750 - 16802627
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  |||||| |||||||||| ||||||| |  ||||||||| ||||||| ||  |||| |  |||| |||||||  | ||    
T  16802750 tttgctacaatagacccactcatttttataaaggtctattttagcaagaagtaccttttcacttggacaaaaggacccatatttttgttttttgaaccaa 16802651  T
Q  268 ttaaatgtaaagggcacaaatgta 291  Q
    |||||  |||||| ||||||||||    
T  16802650 ttaaaattaaaggacacaaatgta 16802627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 7834977 - 7834866
Alignment:
Q  200 ggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgtactttttgt 299  Q
    |||||||| || ||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7834977 ggtctattttaacaagcaaaaccttttcacttggatacaagaacccttgcttttattttttgggcaaattaaatataaagggcacaaatgtactttttgt 7834878  T
Q  300 ttaaatgttaga 311  Q
    ||||||||||||    
T  7834877 ttaaatgttaga 7834866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 45551873 - 45551750
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttg-cttttattttttgggcaa 266  Q
    |||||||||||||| |||| | |||| ||||||||||||| |||||| |||||||||||||||| |||| ||| |||||||  |||| |||||||| |||    
T  45551873 tttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagacccttgttttttgttttttggacaa 45551774  T
Q  267 attaaatgtaaagggcacaaatgta 291  Q
    || |||| | ||||||| |||||||    
T  45551773 ataaaat-tgaagggcataaatgta 45551750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 5995253 - 5995325
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |||||||||||||||||||||||||    
T  5995253 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaa 5995325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 45550998 - 45551077
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccctt 247  Q
    |||||||||||||| |||| | |||| ||||||||||||| |||||| |||||||||||||||| |||| ||| ||||||    
T  45550998 tttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagaccctt 45551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 27268310 - 27268218
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttatttttt 260  Q
    |||| |||||||||||||| |  ||| ||||||||||||| |||||| || |||||||||| ||||||| ||| ||| ||  |||||||||||    
T  27268310 tttgatacaatagatccactcattttcatgaaggtctattttagcaatcagcaccttttcacttggacataaagacctttatttttatttttt 27268218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 41970888 - 41970980
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttatttttt 260  Q
    |||||||||||||| |||| |  ||| |||||| |||||| |||||| ||||||||||||| |||||||  || ||||||| |||| ||||||    
T  41970888 tttgctacaatagacccactcattttcatgaagatctattttagcaaccaacaccttttcacttggacaagaatacccttgtttttgtttttt 41970980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 27258176 - 27258054
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaagg-tctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaa 266  Q
    |||||| |||||||||||| |  ||| ||||||| |||||| |||||| ||||||||||||| ||||||| ||| ||||||   ||| |||||| | | |    
T  27258176 tttgctgcaatagatccactcattttcatgaagggtctattttagcaatcaacaccttttcacttggacataaagaccctt--atttttttttttgacga 27258079  T
Q  267 attaaatgtaaagggcacaaatgta 291  Q
    ||||||  |||||| ||||||||||    
T  27258078 attaaaattaaaggacacaaatgta 27258054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 5997679 - 5997611
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggaca 236  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| || |||||||||| |||||||    
T  5997679 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccagcaccttttcacttggaca 5997611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 11792383 - 11792246
Alignment:
Q  171 gctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaatta 270  Q
    |||||||||||  |||  || |||||||||||||||| |||||||| |||||||| || ||||||||||||||||||  |||| ||||||||| ||||||    
T  11792383 gctacaatagacgcacttcagtttatgaaggtctattttagcaagctacacctttacacttggacacaaaaacccttatttttgttttttgggtaaatta 11792284  T
Q  271 aatgtaaagggcacaaatgtactttttgtttaaatgtt 308  Q
    ||| |||||| |||||||||| ||||||||||||||||    
T  11792283 aatctaaaggacacaaatgtaatttttgtttaaatgtt 11792246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 11791361 - 11791471
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| ||||  ||||||||||| ||||||| |||||||||| ||||||||| ||||||||||| |||| |  ||||||||||||||||||    
T  11791361 tttgctacaatagacccacttcattttatgaatgtctattttagcaagcaataccttttcacttggacacaaagacccctatttttattttttgggcaaa 11791460  T
Q  268 ttaaatgtaaa 278  Q
    |||||| ||||    
T  11791461 ttaaatctaaa 11791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 34838039 - 34837896
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  |||||||||| | |||| |||||| |||||| |||||| |||||||||||||| |||  |||| ||||||  |||||    
T  34838039 tttgctacaatagacccactcatttttatgaagttttattttagcaaccaacactttttcaattggacacaaaaacacttatttttgtttttttagcaaa 34837940  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    |||||  ||||||||||||||||| ||||  |||||| ||||||    
T  34837939 ttaaaactaaagggcacaaatgtaattttaatttaaaagttaga 34837896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 34836773 - 34836878
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgt 290  Q
    ||||||||||||||||| || ||| ||||| ||||||| |||||| |||||||||||  |||| ||||||| ||||||||||  ||||||||||||||||    
T  34836773 ttttatgaaggtctattttatcaaccaacatcttttcaattggacccaaaaacccttatttttgttttttgagcaaattaaaactaaagggcacaaatgt 34836872  T
Q  291 actttt 296  Q
    | ||||    
T  34836873 aatttt 34836878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 34978367 - 34978472
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgt 290  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||  ||||||||||  |||| ||||||| ||||||||||  ||| ||||||||||||    
T  34978367 ttttatgaaggtctattttatcaaccaacaccttttcaattggacctaaaaacccttatttttgttttttgagcaaattaaaactaaggggcacaaatgt 34978466  T
Q  291 actttt 296  Q
    | ||||    
T  34978467 aatttt 34978472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 20627527 - 20627649
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  ||| ||||| ||||||| |||||  ||||||||||||| ||||||||||| ||||||| |||| |||| |||| |||    
T  20627527 tttgctacaatagacccactcattttcatgaaagtctattttagcacccaacaccttttcacttggacacaaagacccttgtttttgttttatgggaaaa 20627626  T
Q  268 ttaaatgtaaagggcacaaatgt 290  Q
     ||||  |||||| |||||||||    
T  20627627 ctaaaactaaaggtcacaaatgt 20627649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 31135170 - 31135292
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaa-cccttgcttttattttttgggcaa 266  Q
    |||||||||||||| | || |  ||| ||||||||||||| |||||| ||||||||||||| ||||||| ||||| |||||| |||| ||||||||| ||    
T  31135170 tttgctacaatagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcacttggacataaaaagcccttg-tttttttttttgggaaa 31135268  T
Q  267 attaaatgtaaagggcacaaatgt 290  Q
    |  |||  ||||||||||||||||    
T  31135269 acaaaaactaaagggcacaaatgt 31135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 31135966 - 31135892
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaa 242  Q
    ||||||||||||||||||  | |||| |||||||| |||| |||||| ||||||||||||| |||||||||||||    
T  31135966 tttgctacaatagatccattcaatttcatgaaggtgtattttagcaaccaacaccttttcacttggacacaaaaa 31135892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 12921930 - 12921863
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggac 235  Q
    |||||||||||||| ||||  ||||||||||||||||||| |||||  || |||||||||||||||||    
T  12921930 tttgctacaatagacccacttcattttatgaaggtctattttagcatccagcaccttttcatttggac 12921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 31914523 - 31914617
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgg 262  Q
    |||||||||||||| |||| |  ||| |||||| |||||| |||||| || |||||||||| ||||||||||| ||||||  |||| ||||||||    
T  31914523 tttgctacaatagacccactcattttcatgaagatctattttagcaaccagcaccttttcacttggacacaaagacccttatttttgttttttgg 31914617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 12206764 - 12206836
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||||||||||||||||| |||||| |  |||||||||| |||||||||||    
T  12206764 tttgctacaatagacccactcatttttatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 12206836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 23089338 - 23089215
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  ||| ||| ||||||||| |||||| ||||||||||||| |||||||  || ||||||  |||| |||||||| | ||    
T  23089338 tttgctacaatagacccactcattttcatgtaggtctattttagcaaccaacaccttttcacttggacaagaatacccttatttttgttttttggaccaa 23089239  T
Q  268 ttaaatgtaaagggcacaaatgta 291  Q
    | |||  ||||||  |||||||||    
T  23089238 tcaaaactaaaggatacaaatgta 23089215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 12921129 - 12921205
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    ||||||||||||||  |||  |||||||||||||| |||| |||||  || ||||||||||||||||| |||||||||    
T  12921129 tttgctacaatagacgcacttcattttatgaaggtttattttagcatccagcaccttttcatttggac-caaaaaccc 12921205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 6311852 - 6311784
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggaca 236  Q
    ||||||| |||||| ||||  ||||| ||||||||||||| |||||||   ||||||||||||||||||    
T  6311852 tttgctataatagacccacctcatttcatgaaggtctattttagcaaggtgcaccttttcatttggaca 6311784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 42523225 - 42523269
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggac 235  Q
    |||||||||||||| || ||||||| |||||||||||||||||||    
T  42523225 ttttatgaaggtctcttttagcaagtaacaccttttcatttggac 42523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 20628383 - 20628289
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaa 286  Q
    ||||||||||||||||| || ||||||||||||||||| | ||||| ||||  || || |||| ||||||| |  |||||||  ||||||||||||    
T  20628383 ttttatgaaggtctattttaccaagcaacaccttttcactaggaca-aaaagaccatgtttttgttttttgagacaattaaaactaaagggcacaa 20628289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 23088276 - 23088399
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| ||||||||| ||| || ||||  || ||||||  |||| |||||||| | ||    
T  23088276 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccaacaccttctcacttcgacaagaatacccttatttttgttttttggaccaa 23088375  T
Q  268 ttaaatgtaaagggcacaaatgta 291  Q
    | |||  |||||| || |||||||    
T  23088376 tcaaaactaaaggacaaaaatgta 23088399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 48314367 - 48314430
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcattt 231  Q
    |||||| ||||||| |||| |  ||| ||||| ||||||| |||||||||||||||||||||||    
T  48314367 tttgctgcaatagacccactcattttcatgaaagtctattttagcaagcaacaccttttcattt 48314430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 6310823 - 6310887
Alignment:
Q  172 ctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggaca 236  Q
    |||||||||||||||  ||||| ||||||||||||| ||| |||   |||||||||| |||||||    
T  6310823 ctacaatagatccacctcatttcatgaaggtctattttaggaaggtgcaccttttcacttggaca 6310887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 12210986 - 12210914
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| | || |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  12210986 tttgctacaatagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 12210914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 31689177 - 31689249
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |  |||||||||| | |||||||||    
T  31689177 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactcggacacaaa 31689249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 31908421 - 31908357
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttg 232  Q
    |||||||||||||| |||| |  ||||||||||||||||| |||||||   ||||||||| ||||    
T  31908421 tttgctacaatagacccactcatttttatgaaggtctattttagcaagttgcaccttttcctttg 31908357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 54501687 - 54501587
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgt 290  Q
    ||||||||||||||| | |||||| |||||| |||| | ||||||| ||| || | || |||| |||||||| | |||||||   ||||| |||||||||    
T  54501687 ttttatgaaggtctaatttagcaaccaacacatttttacttggacaaaaagactcatgtttttgttttttggaccaattaaaatcaaaggacacaaatgt 54501588  T
Q  291 a 291  Q
    |    
T  54501587 a 54501587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 45631207 - 45631067
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||| ||||||||| ||||  ||||||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||  |||| ||||||||| |||    
T  45631207 tttgttacaatagacccacttcattttatgaaggtctattttagcaagctacacctttacacttggacataaaaacccttatttttgttttttgggtaaa 45631108  T
Q  268 ttaaatgtaaagggcacaaatgtactttttgtttaaatgtt 308  Q
    |||||| |||||| ||||||||||  |||||||||||||||    
T  45631107 ttaaatctaaaggacacaaatgtaaattttgtttaaatgtt 45631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 16591594 - 16591509
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgctttt 253  Q
    |||||||||||||| |||    |||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||    
T  16591594 tttgctacaatagacccatttaatttcatgaaggtctattttagcaaccaacaccttttcacttggacacaaaaacccttgttttt 16591509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 18767637 - 18767546
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttt 259  Q
    ||||||||||||||  ||| |  |||||| |||||||||| |||||| ||||||||||||| || |||||||| ||||||| ||| ||||||    
T  18767637 tttgctacaatagactcactcatttttataaaggtctattttagcaaccaacaccttttcacttagacacaaagacccttgttttgattttt 18767546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 9243994 - 9244070
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    |||||||||||||| ||||  ||||||||||||||||||| |||||   | ||||||||||||||||| |||||||||    
T  9243994 tttgctacaatagacccacttcattttatgaaggtctattttagcaccgagcaccttttcatttggac-caaaaaccc 9244070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 29558175 - 29558255
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaa 272  Q
    ||||||||||||||||| |||||| ||||||||||| | ||||||||||| |  |||| |||| ||||||||| ||||||||    
T  29558175 ttttatgaaggtctatt-tagcaaccaacacctttttacttggacacaaagattcttgtttttgttttttgggaaaattaaa 29558255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 9244267 - 9244338
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgg 262  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||||  || ||||||| |||| | ||||||    
T  9244267 ttttatgaaggtctattttagcatccaacaccttttcagttggacaataacacccttgtttttttattttgg 9244338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 18237696 - 18237618
Alignment:
Q  163 atagctttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaa 241  Q
    |||| |||| ||||||||| |||| | ||||| |||||||||||| |||||||   ||||||||| |||||||| ||||    
T  18237696 ataggtttgttacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttcctttggacataaaa 18237618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 18236657 - 18236730
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaa 241  Q
    ||||||| |||||| || | | ||||| |||||||||||| |||||||   ||||||||| |||||||||||||    
T  18236657 tttgctataatagacccgctctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaaa 18236730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 45630275 - 45630316
Alignment:
Q  250 ttttattttttgggcaaattaaatgtaaagggcacaaatgta 291  Q
    |||||||||||||||||||||||| ||||| ||||| |||||    
T  45630275 ttttattttttgggcaaattaaatctaaagagcacacatgta 45630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 30972074 - 30971954
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| |||| | |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||| ||||||||  |||    
T  30972074 tttgctacaatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaaaacccttg--ttttttttttggaaaaa 30971977  T
Q  268 ttaaatgtaaagggcacaaatgt 290  Q
     ||||  |||||||| |||||||    
T  30971976 ctaaaattaaagggctcaaatgt 30971954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 1636848 - 1636971
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    ||||||||||||||| ||| |  ||| |||||| |||||| | |||| ||||| ||||||||||||||||||| ||||||| |||| ||||||||  |||    
T  1636848 tttgctacaatagattcactcattttcatgaagatctatttttgcaaccaacatcttttcatttggacacaaagacccttgtttttgttttttggaaaaa 1636947  T
Q  268 ttaaatgtaaagggcacaaatgta 291  Q
     ||||  ||| |||| ||||||||    
T  1636948 ctaaaactaaggggcgcaaatgta 1636971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 28965798 - 28965903
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaattaaatgtaaagggcacaaatgt 290  Q
    ||||||||| || |||| || |||  |||||||||||| ||||||  ||||||||||  |||| ||||||| ||||||||||  ||||||||||||||||    
T  28965798 ttttatgaaagtttattttatcaacaaacaccttttcaattggacctaaaaacccttatttttgttttttgagcaaattaaaactaaagggcacaaatgt 28965897  T
Q  291 actttt 296  Q
    | ||||    
T  28965898 aatttt 28965903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 30971285 - 30971362
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| || ||| |||||| ||||||||||||||||    
T  30971285 tttgctacaatagacccactcattttcatgaaggtctattttagcaaccatcactttttcacttggacacaaaaaccc 30971362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 5152521 - 5152417
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgggcaaa 267  Q
    |||||||||||||| || | |  ||||||||||||||||| |||||||   |||||||||||||||||  ||| | || || |||| ||||||||| |||    
T  5152521 tttgctacaatagacccgctcatttttatgaaggtctattttagcaagtggcaccttttcatttggaccaaaagatccatgtttttgttttttgggaaaa 5152422  T
Q  268 ttaaa 272  Q
     ||||    
T  5152421 ctaaa 5152417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 16106092 - 16106020
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  16106092 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 16106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 16113332 - 16113260
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  16113332 tttgctacaatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 16113260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 1637619 - 1637573
Alignment:
Q  189 cattttatgaaggtctattctagcaagcaacaccttttcatttggac 235  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||||    
T  1637619 cattttatgaaggtctattttagcaattagcaccttttcatttggac 1637573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 23220008 - 23220066
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacacctttt 226  Q
    |||||||||||||| |||| |  ||||||||||||||||| ||||||||  ||||||||    
T  23220008 tttgctacaatagacccacccttttttatgaaggtctattttagcaagctgcacctttt 23220066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 32744033 - 32744070
Alignment:
Q  191 ttttatgaaggtctattctagcaagcaacaccttttca 228  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  32744033 ttttatgaaggtctattttagcaaccaacaccttttca 32744070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 16101523 - 16101595
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    ||||||||||||||  ||| |  ||| ||||||||||||| |||||| |  |||||||||| |||||||||||    
T  16101523 tttgctacaatagacacactcattttcatgaaggtctattttagcaacctgcaccttttcacttggacacaaa 16101595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 33471165 - 33471257
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttatttttt 260  Q
    |||||||||||||| |||  |  ||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||| ||||||    
T  33471165 tttgctacaatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaagacccttgtttttgtttttt 33471257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 33471921 - 33471854
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggac 235  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||||||  | |||||||||||||||||    
T  33471921 tttgctacaatagacccacttcattttatgaaggtctattttagcaactagcaccttttcatttggac 33471854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 4300933 - 4301027
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttgg 262  Q
    |||||||||||||| ||||    ||| |||||| |||||| |||||| ||||||||||||| |||||||||||| |||||| |||||||||||||    
T  4300933 tttgctacaatagacccacttattttcatgaagatctattttagcaaccaacaccttttcacttggacacaaaaccccttgtttttattttttgg 4301027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 40929925 - 40929781
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgctttta-ttttttgggcaa 266  Q
    |||||||||||||| |||| |  |||||||||||| |||| |||||| ||||||||||||||||||||  ||| |  | || | ||| ||||||||| ||    
T  40929925 tttgctacaatagacccactcatttttatgaaggtttattttagcaaccaacaccttttcatttggacgaaaagattcatgttattatttttttgggaaa 40929826  T
Q  267 attaaatgtaaagggcacaaatgtactttttgtttaaatgttaga 311  Q
    ||||||  |||||||||||| |||  ||||  |||||||||||||    
T  40929825 attaaaactaaagggcacaattgtcattttcatttaaatgttaga 40929781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 54285883 - 54285811
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||||| |||| |  ||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  54285883 tttgctacaatagacccactcatttttatgaaggtctattttagcaacctacaccttttcatttggacacaaa 54285811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 2841274 - 2841198
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaaccc 245  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||||    ||||||||||||||||||| |||||||||    
T  2841274 tttgctacaatagacccacttcattttatgaaggtctattttagcgccaaacaccttttcatttggac-caaaaaccc 2841198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 27473857 - 27473930
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaa 241  Q
    |||||||||||||| |||| | ||||| |||||||||||| |||||||   ||||||||| |||||||||||||    
T  27473857 tttgctacaatagacccactctattttgtgaaggtctattttagcaagatgcaccttttcctttggacacaaaa 27473930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 14460201 - 14460134
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggac 235  Q
    |||||||||||||||| ||   |||||||||||||||||| ||||||  | |||||||||||||||||    
T  14460201 tttgctacaatagatcaactttattttatgaaggtctattttagcaattagcaccttttcatttggac 14460134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 27474948 - 27474875
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaa 241  Q
    |||||||||||||| |||| | ||||| |||| ||||||| |||||||  |||||||||  |||||||||||||    
T  27474948 tttgctacaatagacccactctattttgtgaacgtctattttagcaagatacacctttttctttggacacaaaa 27474875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 33148367 - 33148274
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaaaacccttgcttttattttttg 261  Q
    |||||||||||| | ||||  ||||||||||||||||||| |||||||   |||||||||| ||||||| |||  ||| || |||| |||||||    
T  33148367 tttgctacaataaacccacctcattttatgaaggtctattttagcaaggtgcaccttttcacttggacataaatgcccatgtttttgttttttg 33148274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 27317543 - 27317475
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggaca 236  Q
    |||||||||||||| || | |  ||| |||||||| |||| |||||||||||||||||||||| |||||    
T  27317543 tttgctacaatagacccgctcattttcatgaaggtttattttagcaagcaacaccttttcattaggaca 27317475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 27359903 - 27359843
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttca 228  Q
    |||||||||||||| |||| |  ||| ||||||||||||| |||||| |||||||||||||    
T  27359903 tttgctacaatagacccactcattttcatgaaggtctattttagcaaacaacaccttttca 27359843  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 17619210 - 17619140
Alignment:
Q  170 tgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggacacaaa 240  Q
    |||||||||||| |||| |  ||| ||||||||||||| |||||| ||  ||||||||| |||||||||||    
T  17619210 tgctacaatagacccactcattttcatgaaggtctattttagcaaccagtaccttttcacttggacacaaa 17619140  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 28422913 - 28422853
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttca 228  Q
    |||||||||||||| |||| |  ||||||||| ||||||| |||||| || ||||||||||    
T  28422913 tttgctacaatagacccactcatttttatgaaagtctattttagcaaccatcaccttttca 28422853  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 33147332 - 33147400
Alignment:
Q  168 tttgctacaatagatccacaccattttatgaaggtctattctagcaagcaacaccttttcatttggaca 236  Q
    |||||||||||||| ||||  ||||| |||||| |||||| |||||||   |||||||||| |||||||    
T  33147332 tttgctacaatagacccacctcatttcatgaagatctattttagcaagatgcaccttttcacttggaca 33147400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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