View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2897_low_6 (Length: 410)
Name: NF2897_low_6
Description: NF2897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2897_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 474470 - 474061
Alignment:
| Q |
1 |
ataaaattattgtactgtggacaacaatcaaaggacaagaaaacagaaaagtttctataaagacacttcacaaacttatctatgatttgacacgcggcgg |
100 |
Q |
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| T |
474470 |
ataaaattattgtactgtggacaacaatcaaaggacaagaaaacagaaaagtttctataaagacacttcacaaacttatctatgatttgacacgcggcgg |
474371 |
T |
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| Q |
101 |
cttttagcattttacccgagccattttcaggaacattgaatataactgccaaaacagactgtctagcagcaatctatatcggtcgtcctcttcaattatt |
200 |
Q |
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| T |
474370 |
cttttagcattttacccgagccattttcaggaacattgaatataactgccaaaacagactgtctagcagcaatctatatcggtcgtcctcttcaattatt |
474271 |
T |
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| Q |
201 |
tatctgtataaccatcaattttctaatttacacgtccttttcattccgacctgctagctcatttgttctccaattaaatccaaacctacaaggaggaacg |
300 |
Q |
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| T |
474270 |
tatctgtataaccatcaattttctaatttacacgtccttttcattccgacctgctagctcatttgttctccaattaaatccaaacctacaaggaggaacg |
474171 |
T |
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| Q |
301 |
acacaccttggaataataagtagtagaaatgcatcccttgcgccgataacaggctcctaattgcagccgttagcagcaaaaatgcaagtgcaagctcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474170 |
acacaccttggaataataagtagtagaaatgcatcccttgcgccgataacaggctcctaattgcagccgttagcagcaaaaatgcaagtgcaagctcttt |
474071 |
T |
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| Q |
401 |
cttatatatc |
410 |
Q |
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| T |
474070 |
cttatatatc |
474061 |
T |
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