View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_high_1 (Length: 1142)

Name: NF2898_high_1
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_high_1
NF2898_high_1
[»] chr4 (28 HSPs)
chr4 (333-844)||(9603823-9604324)
chr4 (928-1132)||(9603530-9603734)
chr4 (39-263)||(9604395-9604611)
chr4 (472-575)||(2491653-2491756)
chr4 (469-575)||(50908771-50908877)
chr4 (941-1131)||(9582932-9583136)
chr4 (941-1131)||(9588627-9588831)
chr4 (469-575)||(50908584-50908690)
chr4 (487-575)||(11983982-11984070)
chr4 (40-94)||(9571565-9571619)
chr4 (1026-1132)||(9594727-9594833)
chr4 (469-575)||(44468995-44469101)
chr4 (503-575)||(27529986-27530058)
chr4 (703-779)||(30441368-30441444)
chr4 (739-802)||(782390-782453)
chr4 (468-575)||(11130715-11130822)
chr4 (473-575)||(11983840-11983941)
chr4 (702-802)||(7257305-7257405)
chr4 (701-756)||(10156765-10156820)
chr4 (475-574)||(14203929-14204028)
chr4 (469-524)||(25447187-25447242)
chr4 (470-548)||(14204555-14204632)
chr4 (607-666)||(909047-909107)
chr4 (746-802)||(3664230-3664286)
chr4 (499-575)||(10819621-10819696)
chr4 (469-568)||(11983688-11983787)
chr4 (740-802)||(55301174-55301235)
chr4 (475-560)||(37082433-37082518)
[»] chr8 (11 HSPs)
chr8 (469-575)||(32094989-32095095)
chr8 (726-798)||(44173167-44173239)
chr8 (725-802)||(9045697-9045774)
chr8 (700-802)||(27157688-27157790)
chr8 (468-575)||(32094784-32094891)
chr8 (497-575)||(21598707-21598785)
chr8 (700-790)||(39039698-39039788)
chr8 (470-548)||(37745142-37745220)
chr8 (726-779)||(39555878-39555931)
chr8 (708-787)||(37507539-37507617)
chr8 (732-787)||(40899651-40899706)
[»] chr5 (24 HSPs)
chr5 (473-575)||(22497242-22497344)
chr5 (700-802)||(35323597-35323699)
chr5 (469-566)||(13861234-13861331)
chr5 (469-575)||(31289767-31289873)
chr5 (703-802)||(21039236-21039335)
chr5 (497-575)||(36914071-36914149)
chr5 (469-574)||(40744518-40744623)
chr5 (610-673)||(22431260-22431323)
chr5 (699-798)||(31859712-31859811)
chr5 (701-787)||(17223062-17223148)
chr5 (470-559)||(22499274-22499363)
chr5 (700-779)||(13271486-13271565)
chr5 (469-524)||(22497359-22497414)
chr5 (469-516)||(22498634-22498681)
chr5 (469-514)||(17761778-17761823)
chr5 (729-803)||(18401235-18401310)
chr5 (469-512)||(22498877-22498920)
chr5 (529-575)||(11562977-11563023)
chr5 (702-800)||(14872588-14872686)
chr5 (469-575)||(42859090-42859196)
chr5 (726-779)||(8217125-8217178)
chr5 (529-574)||(22497542-22497587)
chr5 (746-787)||(28503275-28503315)
chr5 (475-560)||(34992093-34992178)
[»] chr3 (26 HSPs)
chr3 (469-575)||(32981548-32981654)
chr3 (700-789)||(7925337-7925426)
chr3 (469-575)||(496000-496106)
chr3 (469-557)||(13661618-13661706)
chr3 (470-569)||(13662066-13662165)
chr3 (470-575)||(12012249-12012354)
chr3 (469-569)||(13662377-13662477)
chr3 (468-575)||(13661704-13661811)
chr3 (708-802)||(25123224-25123318)
chr3 (469-575)||(31721465-31721571)
chr3 (702-799)||(33513396-33513492)
chr3 (702-802)||(36692887-36692987)
chr3 (702-790)||(23771674-23771764)
chr3 (704-770)||(26665523-26665589)
chr3 (503-575)||(496128-496200)
chr3 (505-573)||(12012651-12012719)
chr3 (747-802)||(36679272-36679327)
chr3 (728-802)||(32808564-32808638)
chr3 (469-567)||(32981239-32981336)
chr3 (478-519)||(4148022-4148063)
chr3 (478-519)||(4148858-4148899)
chr3 (478-519)||(4164627-4164668)
chr3 (475-560)||(4333914-4333999)
chr3 (734-802)||(14338928-14338994)
chr3 (475-560)||(21631163-21631248)
chr3 (486-575)||(32981679-32981767)
[»] chr7 (16 HSPs)
chr7 (470-575)||(29530584-29530689)
chr7 (702-800)||(40256804-40256902)
chr7 (469-575)||(29237313-29237417)
chr7 (472-575)||(44602643-44602746)
chr7 (510-575)||(12308016-12308081)
chr7 (475-574)||(7668111-7668210)
chr7 (469-552)||(29530454-29530537)
chr7 (475-548)||(19628881-19628954)
chr7 (701-790)||(44453593-44453682)
chr7 (475-548)||(46735898-46735971)
chr7 (504-575)||(44602886-44602958)
chr7 (700-802)||(2391578-2391680)
chr7 (701-787)||(22713451-22713536)
chr7 (713-779)||(31459414-31459480)
chr7 (726-787)||(3255158-3255219)
chr7 (475-560)||(46369842-46369927)
[»] chr6 (14 HSPs)
chr6 (702-844)||(7591053-7591196)
chr6 (720-802)||(989501-989583)
chr6 (703-802)||(6978498-6978598)
chr6 (717-801)||(33450815-33450900)
chr6 (706-789)||(20207190-20207273)
chr6 (706-789)||(22101213-22101296)
chr6 (700-802)||(30522093-30522195)
chr6 (729-786)||(13214195-13214252)
chr6 (476-560)||(12275074-12275158)
chr6 (469-575)||(14911391-14911500)
chr6 (700-787)||(29389192-29389278)
chr6 (699-790)||(32826710-32826801)
chr6 (606-699)||(33623937-33624031)
chr6 (483-552)||(12260033-12260102)
[»] chr1 (16 HSPs)
chr1 (702-790)||(7439097-7439185)
chr1 (708-790)||(31577996-31578077)
chr1 (472-570)||(29699996-29700095)
chr1 (700-802)||(31767924-31768027)
chr1 (469-570)||(43763181-43763276)
chr1 (699-787)||(38091249-38091337)
chr1 (469-552)||(39313407-39313490)
chr1 (469-575)||(34903160-34903266)
chr1 (506-575)||(46997666-46997735)
chr1 (470-569)||(18208574-18208673)
chr1 (607-672)||(26247253-26247319)
chr1 (470-574)||(29700492-29700593)
chr1 (717-794)||(32556519-32556596)
chr1 (469-575)||(43473105-43473211)
chr1 (475-560)||(41770963-41771048)
chr1 (700-787)||(51906955-51907044)
[»] chr2 (10 HSPs)
chr2 (701-800)||(37267707-37267806)
chr2 (702-802)||(5867900-5867999)
chr2 (705-801)||(24166791-24166887)
chr2 (716-802)||(10696366-10696452)
chr2 (499-569)||(38858164-38858234)
chr2 (475-548)||(348297-348370)
chr2 (737-801)||(45203216-45203280)
chr2 (736-787)||(13378426-13378477)
chr2 (469-575)||(23212694-23212800)
chr2 (702-787)||(43050109-43050193)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 333 - 844
Target Start/End: Complemental strand, 9604324 - 9603823
Alignment:
Q  333 gagcaaccatcatcatgtcatctttttcttgtgtaagaatttgcagcagtctcacaacacaattagagtggcatgctttacatgtgaattggtgtcttga 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9604324 gagcaaccatcatcatgtcatctttttcttgtgtaggaatttgcagcagtctcacaacacaattagagtggcatgctttacatgtgaattgatgtcttga 9604225  T
Q  433 gctcatcaatgttcttattaatgttgtgtacaatccatctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactc 532  Q
    ||||||||||||||||||||||||| |            | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||    
T  9604224 gctcatcaatgttcttattaatgttct------------tcctaacaatctataaaaatcgaaatacaacaaaatttcataatcgtccttatgaaaattc 9604137  T
Q  533 atgatctttttaattttatatgcataatggtcattttgcaaaannnnnnnnnnnnnnnn---aaagatttaattatggattggtgactcactagttgtta 629  Q
    | |||||||||||||||||||||||| ||||||||||||||||                   ||||||| ||||| ||||||||||||||||||||||||    
T  9604136 acgatctttttaattttatatgcatagtggtcattttgcaaaatttaatttatttgttttttaaagatt-aattacggattggtgactcactagttgtta 9604038  T
Q  630 ggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcccaccctatgaccttct 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9604037 ggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaattagccattatttttcccaccctatgaccttct 9603938  T
Q  730 cgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgctaaaatctgaactacatagacgcttga 829  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  9603937 cgcgcgtcctattcaaattctaaaatctgaaatattttaacgtatttttggaggttttatggggtttttattctaaaatccgaactacatagacgcttga 9603838  T
Q  830 gaaactaataggatg 844  Q
    |||||| ||||||||    
T  9603837 gaaactcataggatg 9603823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 928 - 1132
Target Start/End: Complemental strand, 9603734 - 9603530
Alignment:
Q  928 cagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctactaa 1027  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9603734 cagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctcaaaagttgtttagggtttctactaa 9603635  T
Q  1028 tcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaaaggttagcaccacctatatacctg 1127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  9603634 tcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaaagggtagcaccacctatatacctg 9603535  T
Q  1128 atgat 1132  Q
    |||||    
T  9603534 atgat 9603530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 39 - 263
Target Start/End: Complemental strand, 9604611 - 9604395
Alignment:
Q  39 tgagtagtcaataacagaaagaatattgccttctcatatctgcaatacagatccaagctgttccaatgatccaagcgtgcatgcttacacacttcatgtg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  9604611 tgagtagtcaataacagaaagaatattgccttctcatatctgcaatacagatccaagctgttccaatgatccaagcgtgcatgcatacgcacttcatgtg 9604512  T
Q  139 ttgctcatggagcaatggaaggtcacatacttacactcaagcgttcactacatttgtttcttaatatttatcacattttggctgcaagaccgaacaaagg 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  9604511 ttgctcatggagcaatggaaggtcacatacatacactcaagcgttcactacatttgtttcttaatatttatcacattttggct--------gaacaaagg 9604420  T
Q  239 ttttggtcaaaaatagtgatttata 263  Q
    |||||||||||||||||||||||||    
T  9604419 ttttggtcaaaaatagtgatttata 9604395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 472 - 575
Target Start/End: Original strand, 2491653 - 2491756
Alignment:
Q  472 tactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgc 571  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||| |||| || | | |||||||  |||||||||| |||||||||||||||||||    
T  2491653 tactaacaatatataaaaatcgaagtacaccaaaatttcataatcgtccttattaaaattaatgatctccttaattttatgtgcataatggtcattttgc 2491752  T
Q  572 aaaa 575  Q
    ||||    
T  2491753 aaaa 2491756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 50908877 - 50908771
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||| ||| | ||| |||||||||||||||||||| || || | || ||||| ||||| ||||||||||| ||||||| ||||||||    
T  50908877 atctactaacaatatatgaaagttgaagtacaacaaaatttcataatcatcctttttaaaactcacgatctctttaattttatgtgcataaaggtcattt 50908778  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  50908777 tgcaaaa 50908771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 941 - 1131
Target Start/End: Complemental strand, 9583136 - 9582932
Alignment:
Q  941 agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a 1026  Q
    ||||| ||||||||||||||||||| |  | ||||||||||  ||||||||||| |||||||| ||| ||||||||||||||| ||             |    
T  9583136 agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca 9583037  T
Q  1027 atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc 1125  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||  | |||||||| || |||| |||| || |||| ||| |||||||||||||||||    
T  9583036 atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc 9582938  T
Q  1126 tgatga 1131  Q
    ||||||    
T  9582937 tgatga 9582932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 941 - 1131
Target Start/End: Complemental strand, 9588831 - 9588627
Alignment:
Q  941 agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a 1026  Q
    ||||| ||||||||||||||||||| |  | ||||||||||  ||||||||||| |||||||| ||| ||||||||||||||| ||             |    
T  9588831 agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca 9588732  T
Q  1027 atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc 1125  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||  | |||||||| || |||| |||| || |||| ||| |||||||||||||||||    
T  9588731 atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc 9588633  T
Q  1126 tgatga 1131  Q
    ||||||    
T  9588632 tgatga 9588627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 50908690 - 50908584
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||| ||| ||| ||| | ||| ||||||||||||||||||||||| |  | || ||||| |||||  |||||||||| ||||||||||||||||    
T  50908690 atctactaataatatatgaaagttgaagtacaacaaaatttcataatcgtcctctttaaaactcacgatctccttaattttatgtgcataatggtcattt 50908591  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  50908590 tgcaaaa 50908584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 487 - 575
Target Start/End: Original strand, 11983982 - 11984070
Alignment:
Q  487 aaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||| ||||||||||||||||||||||||||||||| | || ||||||  |||  |||||||||| |||||||  ||||||||||||||    
T  11983982 aaaaccgaaatacaacaaaatttcataatcgtctttgttaaaactcatagtctccttaattttatgtgcataacagtcattttgcaaaa 11984070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 9571565 - 9571619
Alignment:
Q  40 gagtagtcaataacagaaagaatattgccttctcatatctgcaatacagatccaa 94  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  9571565 gagtagtcaataactgaaagaatattgccttctcatttctgcgatacagatccaa 9571619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1026 - 1132
Target Start/End: Complemental strand, 9594833 - 9594727
Alignment:
Q  1026 aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaaaggttagcaccacctatatacc 1125  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||    |||||||| ||||| | ||| ||   |||||| ||||||||||||||| |    
T  9594833 aatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagc 9594734  T
Q  1126 tgatgat 1132  Q
    |||||||    
T  9594733 tgatgat 9594727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 44469101 - 44468995
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| |  | || ||||||||||   |||||||||| |||||||| |||||||    
T  44469101 atctactaacaatatatgaaagttgaagtacagcaaaatttcataatcgtcctatttaaaactcatgatcaccttaattttatgtgcataatcgtcattt 44469002  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  44469001 tgcaaaa 44468995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 503 - 575
Target Start/End: Original strand, 27529986 - 27530058
Alignment:
Q  503 aaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    ||||||||||||| ||| || | || ||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  27529986 aaaatttcataattgtccttcttaaaactcatgatctctttaattttatgtgcataatggtcatttcgcaaaa 27530058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 703 - 779
Target Start/End: Original strand, 30441368 - 30441444
Alignment:
Q  703 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 779  Q
    |||| |||||||||||||||| ||||||| ||  |||||| ||||||||||||| | || |||||||||||||||||    
T  30441368 attacttttcccaccctatgagcttctcgtgcaccctatttagattctaaaatccgaaacatttcaacgtatttttg 30441444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 739 - 802
Target Start/End: Complemental strand, 782453 - 782390
Alignment:
Q  739 tattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||| |||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgc 782390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 468 - 575
Target Start/End: Original strand, 11130715 - 11130822
Alignment:
Q  468 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 567  Q
    |||||||||||| | ||||||| |  || |||| |||||||||||||||||| |  | || |||||||||||  || ||||||| ||||||||||||| |    
T  11130715 catctactaacagtatataaaagtttaagtacagcaaaatttcataatcgtcctctttaaaactcatgatctccttgattttatgtgcataatggtcaat 11130814  T
Q  568 ttgcaaaa 575  Q
    ||||||||    
T  11130815 ttgcaaaa 11130822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 473 - 575
Target Start/End: Original strand, 11983840 - 11983941
Alignment:
Q  473 actaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgca 572  Q
    ||||||||| ||||||||||||| |||| ||||| |||||||||||||| || || || |||  |||  ||||||||||||||||||  ||||||| |||    
T  11983840 actaacaatatataaaaatcgaagtacatcaaaa-ttcataatcgtcttcattaatacgcatagtctccttaattttatatgcataacagtcatttcgca 11983938  T
Q  573 aaa 575  Q
    |||    
T  11983939 aaa 11983941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 702 - 802
Target Start/End: Complemental strand, 7257405 - 7257305
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||| |||| |||||||||||  |||||||  | |||||||  |||||||||||    |||||||||| | |||||||||||||||||||| |||||||    
T  7257405 cattactttttccaccctatgaggttctcgcatgccctattcgtattctaaaatccaagatatttcaacatgtttttggaggttttatgaggattttatg 7257306  T
Q  802 c 802  Q
    |    
T  7257305 c 7257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 701 - 756
Target Start/End: Original strand, 10156765 - 10156820
Alignment:
Q  701 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatc 756  Q
    |||||||||||||||  |||||| ||||||||||  ||||||||||||||||||||    
T  10156765 ccattatttttcccattctatgagcttctcgcgcaccctattcagattctaaaatc 10156820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 475 - 574
Target Start/End: Original strand, 14203929 - 14204028
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaa 574  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || |||||||| |||||||| ||||    
T  14203929 taacaatatataaaaatcaaagtccatcaaaatttcataataatccttattaaaactcattatcttcttaatttcatgtgcataattgtcatttttcaaa 14204028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Complemental strand, 25447242 - 25447187
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttat 524  Q
    ||||||||||||| ||||||||| |||  |||||||||||||||||||||| ||||    
T  25447242 atctactaacaatgtataaaaattgaagcacaacaaaatttcataatcgtccttat 25447187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 14204555 - 14204632
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 548  Q
    ||||||||||||  ||||||||| || | || ||||||||||||||||||||||| || |||||| ||||| |||||||    
T  14204555 tctactaacaata-ataaaaatcaaagtccaccaaaatttcataatcgtctttattaaaactcattatcttcttaattt 14204632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 607 - 666
Target Start/End: Original strand, 909047 - 909107
Alignment:
Q  607 gattggtgactcactagttg-ttaggaagaatctagaataatattgtcgatataagatttt 666  Q
    |||||||||||| ||||||  ||| ||||| ||||||||||||||||| ||||||||||||    
T  909047 gattggtgactcgctagtttattaagaagagtctagaataatattgtctatataagatttt 909107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 746 - 802
Target Start/End: Original strand, 3664230 - 3664286
Alignment:
Q  746 attctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||||||||| | ||||||| ||||| |||||| |||||||||||| |||||||||    
T  3664230 attctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgc 3664286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 499 - 575
Target Start/End: Original strand, 10819621 - 10819696
Alignment:
Q  499 caacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||||||||||||||||||  ||| || |||||||||||| |||||||| | |||| ||| |||||||| |||||    
T  10819621 caacaaaatttcataatcgtccctattaaaactcatgatcttcttaattttttttgcacaat-gtcattttccaaaa 10819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 469 - 568
Target Start/End: Original strand, 11983688 - 11983787
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| |||||||| |||  |||| ||||| |||||||||||  |||| || ||||||  |||  |||||||||| |||||||  |||||||    
T  11983688 atctactaacaatatataaaaaccgaggtacagcaaaacttcataatcgttcttattaaaactcatagtctccttaattttatgtgcataacagtcattt 11983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 740 - 802
Target Start/End: Complemental strand, 55301235 - 55301174
Alignment:
Q  740 attcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    |||||||||||||||||   ||||||||||||| ||||| ||| ||||||||| |||||||||    
T  55301235 attcagattctaaaatcca-aatatttcaacgtgtttttagagattttatgagatttttatgc 55301174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 37082433 - 37082518
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  37082433 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 37082518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 8e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 469 - 575
Target Start/End: Original strand, 32094989 - 32095095
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| |||||||||| || | || |||||||||||||| |||||||| || |||||||||||  |||||||||| ||||||||||||||||    
T  32094989 atctactaacaatatataaaaatcaaagtccagcaaaatttcataatagtctttattaaaactcatgatctccttaattttatgtgcataatggtcattt 32095088  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  32095089 tgcaaaa 32095095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 726 - 798
Target Start/End: Original strand, 44173167 - 44173239
Alignment:
Q  726 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 798  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||    
T  44173167 ttctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagattttatgaagttttt 44173239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 725 - 802
Target Start/End: Complemental strand, 9045774 - 9045697
Alignment:
Q  725 cttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||| || |||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||  ||||||||||    
T  9045774 cttcttgcacgtcctattcagatttaaaaatctgaaatatttcaacgtgtttttggaggttttatggagtttttatgc 9045697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 700 - 802
Target Start/End: Complemental strand, 27157790 - 27157688
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 799  Q
    ||||||| |||| |||||||||||  |||||| |||| |||||| |||||||||||| | | |||||||||||  |||||||| ||||||| ||| ||||    
T  27157790 gccattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatggggtattta 27157691  T
Q  800 tgc 802  Q
    |||    
T  27157690 tgc 27157688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 468 - 575
Target Start/End: Original strand, 32094784 - 32094891
Alignment:
Q  468 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 567  Q
    ||||||| |||||| | |||||||||||||  | |||||||||| ||||||| |||| || |||| ||||||  |||||||| | |  ||||||||||||    
T  32094784 catctacaaacaatatgtaaaaatcgaaatctagcaaaatttcaaaatcgtcattattaaaactcttgatctccttaattttttgtatataatggtcatt 32094883  T
Q  568 ttgcaaaa 575  Q
    ||||||||    
T  32094884 ttgcaaaa 32094891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 497 - 575
Target Start/End: Original strand, 21598707 - 21598785
Alignment:
Q  497 tacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    ||||||||||||||||||||||| |  | || |||||| |||| ||||||||||| |||||||| ||||||||| ||||    
T  21598707 tacaacaaaatttcataatcgtcctctttaaaactcataatctctttaattttatttgcataatagtcattttgtaaaa 21598785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 700 - 790
Target Start/End: Original strand, 39039698 - 39039788
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 790  Q
    ||||||||||||  || ||||| | ||||| |||||||||||| ||||||||||||| | || |||||||||| ||||| || ||||||||    
T  39039698 gccattatttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagttttatg 39039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 37745142 - 37745220
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 548  Q
    |||||||||||| |||||||||| || | || |||||||||||| ||||| |||| || |||||| ||||| |||||||    
T  37745142 tctactaacaatatataaaaatcaaagtccaccaaaatttcatagtcgtccttattaaaactcattatcttcttaattt 37745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 726 - 779
Target Start/End: Original strand, 39555878 - 39555931
Alignment:
Q  726 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 779  Q
    |||||||||||||| |||||||| ||||||||| ||| ||||||||| ||||||    
T  39555878 ttctcgcgcgtcctgttcagattttaaaatctgaaatgtttcaacgtgtttttg 39555931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 708 - 787
Target Start/End: Original strand, 37507539 - 37507617
Alignment:
Q  708 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    ||||||||||||||||  |||| ||||| |||||||  ||||||||||| | ||| |||||||||  |||||||||||||    
T  37507539 ttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgt-gttttggaggtttt 37507617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 732 - 787
Target Start/End: Original strand, 40899651 - 40899706
Alignment:
Q  732 cgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    |||| |||||||||||| ||||||||| ||||||| ||||| |||||| |||||||    
T  40899651 cgcgccctattcagattttaaaatctgaaatattttaacgtgtttttgaaggtttt 40899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 473 - 575
Target Start/End: Complemental strand, 22497344 - 22497242
Alignment:
Q  473 actaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgca 572  Q
    ||||||||| ||||||||| ||| ||||||||||||| ||||| ||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  22497344 actaacaatatataaaaattgaagtacaacaaaattttataattgtccttattaaaactcatgatctctttaattttatgtgcataatggtcaatttgca 22497245  T
Q  573 aaa 575  Q
    |||    
T  22497244 aaa 22497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 700 - 802
Target Start/End: Original strand, 35323597 - 35323699
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 799  Q
    ||||||| |||||||||| |||||  |||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||   ||||||||    
T  35323597 gccattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggttttacagggttttta 35323696  T
Q  800 tgc 802  Q
    |||    
T  35323697 tgc 35323699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 469 - 566
Target Start/End: Complemental strand, 13861331 - 13861234
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcat 566  Q
    ||||||||||||| ||||||||||||| | || |||||||||||||| |||||||  || | |||||||||  |||||||||| ||||||||||||||    
T  13861331 atctactaacaatatataaaaatcgaagttcagcaaaatttcataattgtctttaataaaattcatgatctccttaattttatgtgcataatggtcat 13861234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 469 - 575
Target Start/End: Original strand, 31289767 - 31289873
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||| ||| | ||   |||||| ||||||||| |||| || ||||| |||||  |||||||||| ||||||||||||||||    
T  31289767 atctactaacaatttataaaaattgaagtccagtgaaattttataatcgtccttattaaaactcaagatctccttaattttatgtgcataatggtcattt 31289866  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  31289867 tgcaaaa 31289873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 703 - 802
Target Start/End: Original strand, 21039236 - 21039335
Alignment:
Q  703 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||||||||||||||||  |  |||||| |||||||||||||||| ||||||| | ||||||||   || | |||||||||||| ||||||||||||||    
T  21039236 attatttttcccaccctacaagtttctcgtgcgtcctattcagattttaaaatccgaaatatttctttgtgtgtttggaggttttttgaggtttttatgc 21039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 36914149 - 36914071
Alignment:
Q  497 tacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||||||| |||||||| |||||  | || |||||||||||  |||||||||| |||||||||||||||||||||||    
T  36914149 tacaacaaaagttcataattgtcttctttaaaactcatgatctccttaattttatgtgcataatggtcattttgcaaaa 36914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 469 - 574
Target Start/End: Original strand, 40744518 - 40744623
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||| |  ||||  | ||| |||||||  |||||||||| | |||||| |||||||    
T  40744518 atctagtaacaatatataaaaatcgaaatacaccaaaatttcataatctttcttatttaaacttatgatctccttaattttatgttcataatagtcattt 40744617  T
Q  569 tgcaaa 574  Q
    | ||||    
T  40744618 tacaaa 40744623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 610 - 673
Target Start/End: Original strand, 22431260 - 22431323
Alignment:
Q  610 tggtgactcactagttgttaggaagaatctagaataatattgtcgatataagattttgtactct 673  Q
    ||||||||||| |||| |||||||  |||||||||||||||||| ||||||||| |||||||||    
T  22431260 tggtgactcacaagttattaggaaagatctagaataatattgtctatataagatcttgtactct 22431323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 699 - 798
Target Start/End: Original strand, 31859712 - 31859811
Alignment:
Q  699 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 798  Q
    |||||||| |||| ||| | ||||| ||||||| ||| ||||||| || ||||||||| | |||||| |||| ||||||||||| ||||||| |||||||    
T  31859712 agccattacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaaatattccaacttatttttggagattttatggggttttt 31859811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 701 - 787
Target Start/End: Original strand, 17223062 - 17223148
Alignment:
Q  701 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    |||||| ||||||||||  ||||  ||||| |||| | |||| ||||||||||||||| ||||||||||||| |||||| |||||||    
T  17223062 ccattacttttcccacctgatgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttt 17223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 470 - 559
Target Start/End: Complemental strand, 22499363 - 22499274
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataa 559  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||| || |||| || ||| |||| |   |||||||||| |||||||    
T  22499363 tctactaacaatatataaaaattgaactacaacaaaatttcataatcatccttattaaaacttatgaccgccttaattttatgtgcataa 22499274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 700 - 779
Target Start/End: Complemental strand, 13271565 - 13271486
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 779  Q
    ||||||| |||| ||||| ||| |  |||||||||||||||||   ||||||||||||| ||||||||||||| ||||||    
T  13271565 gccattactttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttg 13271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Complemental strand, 22497414 - 22497359
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttat 524  Q
    ||||||||||||| |||||||||| || ||||||||||||||| ||||||| ||||    
T  22497414 atctactaacaatatataaaaatcaaagtacaacaaaatttcacaatcgtccttat 22497359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 516
Target Start/End: Complemental strand, 22498681 - 22498634
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatc 516  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  22498681 atctactaacaatctataaaaatcgatgtacaaccaaatttcataatc 22498634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 17761778 - 17761823
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataa 514  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  17761778 atctagtaacaatatataaaaatcgaagtacaacaaaatttcataa 17761823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 729 - 803
Target Start/End: Original strand, 18401235 - 18401310
Alignment:
Q  729 tcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggt-tttatgaggtttttatgct 803  Q
    ||||| || ||||||||||| || |||||| ||| ||||||||| ||||||||||| | |||||||| ||||||||    
T  18401235 tcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgtttttggaggtctgtatgaggtgtttatgct 18401310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 469 - 512
Target Start/End: Complemental strand, 22498920 - 22498877
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcat 512  Q
    |||||||||||||  |||||||||||| ||||||||||||||||    
T  22498920 atctactaacaataaataaaaatcgaagtacaacaaaatttcat 22498877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 11563023 - 11562977
Alignment:
Q  529 actcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||| ||||| |||||||||| |||||||| ||||||||||||||    
T  11563023 actcataatcttcttaattttatgtgcataatagtcattttgcaaaa 11562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 800
Target Start/End: Original strand, 14872588 - 14872686
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 800  Q
    ||||| |||||||||||||| |  |||||| |||  || || | |||||||||||   ||||||||||||| ||||| ||||||||||  |||||||||    
T  14872588 cattacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggttttatagggtttttat 14872686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 42859196 - 42859090
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||||||| |  | |||||||| | |||| || || | || |||||| ||||  ||||||| ||  ||||||| |||||||    
T  42859196 atctactaacaatatataaaaatcgaagtctagcaaaattttacaatcctcctttttaaaactcattatctccttaatttcatgcgcataatcgtcattt 42859097  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  42859096 tgcaaaa 42859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 779
Target Start/End: Original strand, 8217125 - 8217178
Alignment:
Q  726 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 779  Q
    |||||||||| |||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  8217125 ttctcgcgcgccctattcaaattctaaaatctgaaatgttttaacgtgtttttg 8217178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 22497587 - 22497542
Alignment:
Q  529 actcatgatctttttaattttatatgcataatggtcattttgcaaa 574  Q
    |||||||||||  |||||||||| ||||||||||| ||||||||||    
T  22497587 actcatgatctccttaattttatgtgcataatggttattttgcaaa 22497542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 746 - 787
Target Start/End: Complemental strand, 28503315 - 28503275
Alignment:
Q  746 attctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  28503315 attctaaaatctgaaatatttcaacgta-ttttggaggtttt 28503275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 34992093 - 34992178
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  34992093 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 34992178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 32981654 - 32981548
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||| | ||| || ||||||||||||||||||||||| || ||||| || ||  |||||||||| |||||||||||| |||    
T  32981654 atctactaacaatatataaaaattgcaatccatcaaaatttcataatcgtctttattaaaactcaagagctccttaattttatgtgcataatggtcgttt 32981555  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  32981554 tgcaaaa 32981548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 700 - 789
Target Start/End: Original strand, 7925337 - 7925426
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 789  Q
    ||||||| |||| |||||||||||  ||||| || |||||||| ||||||||||||||| |||||||||||||||||||  |||||||||    
T  7925337 gccattactttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttttaaggttttat 7925426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 496106 - 496000
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| | | ||| | ||| ||||||||||||||||||||||| |  | || |||||||||||  |||| ||||| ||||||||||||||||    
T  496106 atctactaacaatatctgaaagttgaagtacaacaaaatttcataatcgtcctcttcaaaactcatgatctccttaactttatgtgcataatggtcattt 496007  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  496006 tgcaaaa 496000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 469 - 557
Target Start/End: Original strand, 13661618 - 13661706
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcat 557  Q
    ||||||||||||| ||||||||||||| | || |||||||||||| ||||  |||| || ||||||||||| ||||||||||| |||||    
T  13661618 atctactaacaatgtataaaaatcgaagtccagcaaaatttcatattcgttcttattaaaactcatgatctctttaattttatgtgcat 13661706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 470 - 569
Target Start/End: Original strand, 13662066 - 13662165
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||| ||| ||||||||| ||| | |||||||| ||||||||| || |||| || |||||||||||  |||||||||| |||||||| ||||||||    
T  13662066 tctactaaaaatatataaaaattgaagtccaacaaaaattcataatcttccttattaaaactcatgatctccttaattttatgtgcataattgtcatttt 13662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 470 - 575
Target Start/End: Original strand, 12012249 - 12012354
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||||||| ||||||||| ||| |  | ||||||||||||||| || | || || |||||| ||||  ||||||| || |||||||||||||||||    
T  12012249 tctactaacaatatataaaaattgaagtctagcaaaatttcataatcctcctaattaaaactcattatctccttaatttcatgtgcataatggtcatttt 12012348  T
Q  570 gcaaaa 575  Q
    ||||||    
T  12012349 gcaaaa 12012354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 469 - 569
Target Start/End: Original strand, 13662377 - 13662477
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    |||||||||||||  |||||||| ||| | ||  |||| |||||||||||| |||| || |||||||||||  |||||||||| |||||||| |||||||    
T  13662377 atctactaacaatgcataaaaattgaagtccagtaaaaattcataatcgtccttattaaaactcatgatctccttaattttatgtgcataattgtcattt 13662476  T
Q  569 t 569  Q
    |    
T  13662477 t 13662477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 468 - 575
Target Start/End: Original strand, 13661704 - 13661811
Alignment:
Q  468 catctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 567  Q
    |||||||||||||  |||||||||  || | |  |||||||||||||||||| |||| || ||||||||| |  |||||||||  |||||||||||||||    
T  13661704 catctactaacaaagtataaaaattaaagtccggcaaaatttcataatcgtccttattaaaactcatgatttccttaattttacgtgcataatggtcatt 13661803  T
Q  568 ttgcaaaa 575  Q
    || |||||    
T  13661804 ttacaaaa 13661811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 708 - 802
Target Start/End: Original strand, 25123224 - 25123318
Alignment:
Q  708 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    |||| ||||| |||||  || ||||||| ||||||||||||||||||||   ||||||| ||||  ||||||||||||||||  |||||||||||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggttttatagggtttttatgc 25123318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 31721571 - 31721465
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||||||  | || || ||| |||||||  ||| |||||  ||||||||  ||||||    
T  31721571 atctactaacaatatataaaaattgaaatacaacaaaattttataatcgtgctgattaaaactaatgatctccttacttttacgtgcataattatcattt 31721472  T
Q  569 tgcaaaa 575  Q
    || ||||    
T  31721471 tgaaaaa 31721465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 702 - 799
Target Start/End: Complemental strand, 33513492 - 33513396
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 799  Q
    |||||||||| |||||||||||  |||| | ||  ||||||| ||||||||||||   ||||||||||||| |||| |||||||||||| ||||||||    
T  33513492 cattattttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggttttatg-ggttttta 33513396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 702 - 802
Target Start/End: Complemental strand, 36692987 - 36692887
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||| ||||| || | ||||| |||||||||||  |||||    |||||||||||| |||||||||| ||||||||| || ||||| ||||||||||||    
T  36692987 cattacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtatttttgaagtttttacgaggtttttatg 36692888  T
Q  802 c 802  Q
    |    
T  36692887 c 36692887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 23771674 - 23771764
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaac--gtatttttggaggttttatg 790  Q
    ||||| ||||| |||||||||| ||| |||||||  |||||  |||||||||||||  |||||||||||  || |||||||||||||||||    
T  23771674 cattacttttcgcaccctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatg 23771764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 704 - 770
Target Start/End: Complemental strand, 26665589 - 26665523
Alignment:
Q  704 ttatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaac 770  Q
    |||||||||||| |||||||  |||||||||||||||||  |||| ||||||| | |||||||||||    
T  26665589 ttatttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaac 26665523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 503 - 575
Target Start/End: Complemental strand, 496200 - 496128
Alignment:
Q  503 aaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||||||||||| || |  | || |||||| ||||  |||||||||| |||||||||||||||||||||||    
T  496200 aaaatttcataatcatcctctttaaaactcattatctccttaattttatgtgcataatggtcattttgcaaaa 496128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 12012719 - 12012651
Alignment:
Q  505 aatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaa 573  Q
    ||||| |||||||||||||| || |||||||||||  || ||||  | |||||||||||||||||||||    
T  12012719 aattttataatcgtctttattaaaactcatgatctccttgatttcttgtgcataatggtcattttgcaa 12012651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 747 - 802
Target Start/End: Complemental strand, 36679327 - 36679272
Alignment:
Q  747 ttctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    |||||||||||| |||||||||| || |||||| || ||||| |||||||||||||    
T  36679327 ttctaaaatctgaaatatttcaatgtttttttgaagtttttacgaggtttttatgc 36679272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 728 - 802
Target Start/End: Original strand, 32808564 - 32808638
Alignment:
Q  728 ctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||||||| |||||| |||| |||||||   ||| ||| ||  ||||||||||||||||||||| |||||||||    
T  32808564 ctcgcgcgttctattcggattttaaaatccaaaattttttaatttatttttggaggttttatgagatttttatgc 32808638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 567
Target Start/End: Complemental strand, 32981336 - 32981239
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatt 567  Q
    ||||||||||||| ||||||||||||| | |   |||||||||| || ||| |||| || ||||||||| |  | |||||||| |||||||||||||||    
T  32981336 atctactaacaatatataaaaatcgaagtcctttaaaatttcatgattgtccttattaa-actcatgatatcctaaattttatgtgcataatggtcatt 32981239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 4148063 - 4148022
Alignment:
Q  478 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 519  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4148063 caatatataaaaatctaaatccaacaaaatttcataatcgtc 4148022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 4148899 - 4148858
Alignment:
Q  478 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 519  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4148899 caatatataaaaatctaaatccaacaaaatttcataatcgtc 4148858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 4164668 - 4164627
Alignment:
Q  478 caatctataaaaatcgaaatacaacaaaatttcataatcgtc 519  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  4164668 caatatataaaaatctaaattcaacaaaatttcataatcgtc 4164627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 4333914 - 4333999
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  4333914 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 4333999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 802
Target Start/End: Original strand, 14338928 - 14338994
Alignment:
Q  734 cgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||||||||||||||| |||||   ||||||||||||| ||||  |||||||||| |||| |||||||    
T  14338928 cgtcctattcagattcttaaatccaaaatatttcaacgtgtttt--gaggttttataaggtatttatgc 14338994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 21631163 - 21631248
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  21631163 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 21631248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 486 - 575
Target Start/End: Complemental strand, 32981767 - 32981679
Alignment:
Q  486 aaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||| ||||| ||| |||||||||||| || | |||| || ||||||||| || |||||||||| |||||||| || |||||| ||||    
T  32981767 aaaaattgaaatccaataaaatttcataaacgaccttattaaaactcatgat-ttcttaattttatgtgcataattgttattttgtaaaa 32981679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 470 - 575
Target Start/End: Complemental strand, 29530689 - 29530584
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||||||| |||||||||| || || | |||||||||||||||||| |||| || |||||||||||  |||||||||  ||| |||||||||||||    
T  29530689 tctactaacaatatataaaaatcaaagtaaagcaaaatttcataatcgtccttattaaaactcatgatctccttaattttacgtgcgtaatggtcatttt 29530590  T
Q  570 gcaaaa 575  Q
    ||||||    
T  29530589 gcaaaa 29530584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 702 - 800
Target Start/End: Original strand, 40256804 - 40256902
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 800  Q
    ||||||||||| ||||||||||  || ||||||| | ||||| |||| ||||||||| |||||| |||||| ||||||||||||||||| |||||||||    
T  40256804 cattatttttctcaccctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggttttatgtggtttttat 40256902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 469 - 575
Target Start/End: Original strand, 29237313 - 29237417
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||  |||||  ||| |||||||||||||||||| |  | || |||||||||||  |||||||||| ||||||||||||||||    
T  29237313 atctactaacaatatataaa--tcgaagcacaccaaaatttcataatcgtcctctttaaaactcatgatctccttaattttatgtgcataatggtcattt 29237410  T
Q  569 tgcaaaa 575  Q
    || ||||    
T  29237411 tgtaaaa 29237417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 472 - 575
Target Start/End: Original strand, 44602643 - 44602746
Alignment:
Q  472 tactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgc 571  Q
    |||||| ||| ||||||| ||||| ||||  |||||||||| |||||| | || || |||||||||||  |||| ||||| |||||||||||||||||||    
T  44602643 tactaaaaatttataaaattcgaagtacataaaaatttcatgatcgtcctcattaaaactcatgatctccttaactttatgtgcataatggtcattttgc 44602742  T
Q  572 aaaa 575  Q
    ||||    
T  44602743 aaaa 44602746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 510 - 575
Target Start/End: Original strand, 12308016 - 12308081
Alignment:
Q  510 cataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||||||| |||| || |||||||||||  ||||||||||||||||||||  ||||||||||||    
T  12308016 cataatcgtccttattaaaactcatgatctccttaattttatatgcataatgagcattttgcaaaa 12308081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 475 - 574
Target Start/End: Complemental strand, 7668210 - 7668111
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaa 574  Q
    |||||||||||||||||  || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || |||||||| |||||||| ||||    
T  7668210 taacaatctataaaaattaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttcatgtgcataattgtcatttttcaaa 7668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 552
Target Start/End: Complemental strand, 29530537 - 29530454
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 552  Q
    ||||||||||||| || ||||||| || | ||| ||||||||||||| ||| |||| || || |||||||| ||||||||||||    
T  29530537 atctactaacaatatacaaaaatctaagtccaaaaaaatttcataattgtcattattaaaacccatgatctctttaattttata 29530454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 475 - 548
Target Start/End: Original strand, 19628881 - 19628954
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 548  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  19628881 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 19628954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 701 - 790
Target Start/End: Original strand, 44453593 - 44453682
Alignment:
Q  701 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 790  Q
    |||||| ||||  |||||||| |  ||||||  |||||||||| |||||||||||  | ||||||||||||| |||||||| ||||||||    
T  44453593 ccattacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatg 44453682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 475 - 548
Target Start/End: Complemental strand, 46735971 - 46735898
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 548  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  46735971 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 46735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 504 - 575
Target Start/End: Original strand, 44602886 - 44602958
Alignment:
Q  504 aaatttcataatcgtctttatgaaga-ctcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    |||||||||||| ||| |||| || | ||||||||||  |||| ||||| |||||||||||||||||||||||    
T  44602886 aaatttcataattgtccttattaaaaactcatgatctccttaactttatgtgcataatggtcattttgcaaaa 44602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 802
Target Start/End: Original strand, 2391578 - 2391680
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 799  Q
    ||||||| ||||  || |||||||  ||||||||||  |||||  |||||||||||| | ||||||||||| |||||||  |||| || || ||||||||    
T  2391578 gccattacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaacatattttttaaggtcttgtggggttttta 2391677  T
Q  800 tgc 802  Q
    |||    
T  2391678 tgc 2391680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 701 - 787
Target Start/End: Complemental strand, 22713536 - 22713451
Alignment:
Q  701 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    |||||| |||| ||||| |||||  |||||| ||| ||||||   ||| ||||||||| ||||||||||||| ||||||||||||||    
T  22713536 ccattactttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttt 22713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 713 - 779
Target Start/End: Original strand, 31459414 - 31459480
Alignment:
Q  713 ccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttg 779  Q
    ||||||||| |  |||||| | |||||||||| ||| ||||||| | ||||||||||||||||||||    
T  31459414 ccaccctataagtttctcgtgtgtcctattcaaattttaaaatccgaaatatttcaacgtatttttg 31459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 787
Target Start/End: Complemental strand, 3255219 - 3255158
Alignment:
Q  726 ttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    ||||||||||  |||||| |||||||||||||  ||||||||||  |||||||| |||||||    
T  3255219 ttctcgcgcgctctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttt 3255158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 46369927 - 46369842
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  46369927 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 46369842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 702 - 844
Target Start/End: Original strand, 7591053 - 7591196
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||| |||||||| |||||||  ||| ||||||||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||  |||   ||     
T  7591053 cattacttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttttgaggttttatgcagttcggatt 7591152  T
Q  802 ctaaaatctgaactacata-gacgcttgagaaactaataggatg 844  Q
    ||||||||  |||| |||| |||||||||||| || ||||||||    
T  7591153 ctaaaatccaaactgcataggacgcttgagaagctcataggatg 7591196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 720 - 802
Target Start/End: Original strand, 989501 - 989583
Alignment:
Q  720 atgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    |||| |||||||| || |||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| || ||||||||    
T  989501 atgagcttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatgggggttttatgc 989583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 703 - 802
Target Start/End: Complemental strand, 6978598 - 6978498
Alignment:
Q  703 attatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgt-atttttggaggttttatgaggtttttatg 801  Q
    |||| |||| ||| |||||||  |||||| ||||||||||  |||||||||||||  ||||||||||||| ||||||||||||||||||  |||||||||    
T  6978598 attactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttatg 6978499  T
Q  802 c 802  Q
    |    
T  6978498 c 6978498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 717 - 801
Target Start/End: Original strand, 33450815 - 33450900
Alignment:
Q  717 cctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggagg-ttttatgaggtttttatg 801  Q
    ||||||| ||||| ||||||||||||| |||||||||||  | ||||||||||||| |||||||||| ||||| ||||| ||||||    
T  33450815 cctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaggcttttaggaggtgtttatg 33450900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 706 - 789
Target Start/End: Complemental strand, 20207273 - 20207190
Alignment:
Q  706 atttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 789  Q
    ||||||| ||| ||||||   ||||||  |||||||||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  20207273 atttttctcactctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 20207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 706 - 789
Target Start/End: Complemental strand, 22101296 - 22101213
Alignment:
Q  706 atttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttat 789  Q
    ||||||| ||| ||||||   ||||||  |||||||||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  22101296 atttttctcactctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttgaagtttttat 22101213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 700 - 802
Target Start/End: Complemental strand, 30522195 - 30522093
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttta 799  Q
    ||||||| |||||||||| |||||  |||| | | | ||||||| ||||| |||||| | ||| |||  |||| ||||||||||||||||||||||||||    
T  30522195 gccattacttttcccaccttatgaggttcttgtgtgccctattcggattccaaaatccgaaatgtttttacgtgtttttggaggttttatgaggttttta 30522096  T
Q  800 tgc 802  Q
    |||    
T  30522095 tgc 30522093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 729 - 786
Target Start/End: Complemental strand, 13214252 - 13214195
Alignment:
Q  729 tcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttt 786  Q
    |||||| ||||||||||||| ||||||| | ||||||||||||| ||||| |||||||    
T  13214252 tcgcgcatcctattcagattttaaaatccgaaatatttcaacgtgtttttagaggttt 13214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 12275158 - 12275074
Alignment:
Q  476 aacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    |||||| |||||||| |||| | | | |||||||||||||| || |||| || |||||||||||  |||||||||| ||||||||    
T  12275158 aacaatatataaaaaccgaagttcgataaaatttcataatcatcgttattaaaactcatgatctccttaattttatgtgcataat 12275074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 14911500 - 14911391
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctt---tatgaagactcatgatctttttaattttatatgcataatggtca 565  Q
    ||||||||||||| ||||||||||||| | || |||||||| ||||| ||| |   ||| || | |||||||||  ||||| |||| ||||| |||| ||    
T  14911500 atctactaacaatatataaaaatcgaagtccagcaaaattttataattgtcctccttattaaaattcatgatctccttaatattatgtgcatgatggaca 14911401  T
Q  566 ttttgcaaaa 575  Q
    ||||||||||    
T  14911400 ttttgcaaaa 14911391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 700 - 787
Target Start/End: Complemental strand, 29389278 - 29389192
Alignment:
Q  700 gccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    ||||||| |||| ||||||||| |  ||||||| || |||||||||||| ||||||| | ||| ||||||||| |||||| |||||||    
T  29389278 gccattactttttccaccctataat-ttctcgcacgccctattcagattttaaaatccgaaatgtttcaacgtgtttttgaaggtttt 29389192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 699 - 790
Target Start/End: Complemental strand, 32826801 - 32826710
Alignment:
Q  699 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 790  Q
    |||||||| |||| |||  ||||||  ||||||||||| |||||   |||||||||| |  ||||||||||||  |||||||||||||||||    
T  32826801 agccattactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatg 32826710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 606 - 699
Target Start/End: Complemental strand, 33624031 - 33623937
Alignment:
Q  606 ggattggtgactcactagtt-gttaggaagaatctagaataatattgtcgatataagattttgtactctttcattgatagtcatccatgaaatta 699  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||| |  ||||||||| || |||| | || || ||| ||||| |||||||||    
T  33624031 ggattgatgactcactagtttgttaggaaggatctaaaataatattttttatataagatcttttactttctcttttataatcatcaatgaaatta 33623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 12260033 - 12260102
Alignment:
Q  483 tataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 552  Q
    |||||| ||| |||||||||||||||||||||| ||| |||| || | ||| |||||  |||||||||||    
T  12260033 tataaatatcaaaatacaacaaaatttcataattgtcattattaaaattcaagatctccttaattttata 12260102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 702 - 790
Target Start/End: Complemental strand, 7439185 - 7439097
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 790  Q
    ||||| ||||| || |||||||  ||||||||||||||||||| ||||||||||||  ||||||||||||| |||||| ||||||||||    
T  7439185 cattacttttctcatcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtttttgaaggttttatg 7439097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 708 - 790
Target Start/End: Complemental strand, 31578077 - 31577996
Alignment:
Q  708 ttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatg 790  Q
    |||||||||| ||||| ||||||||||| ||||||  |||||||||||| | ||||||||||||| |||||||||||||||||    
T  31578077 ttttcccacc-tatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggttttatg 31577996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 472 - 570
Target Start/End: Original strand, 29699996 - 29700095
Alignment:
Q  472 tactaacaatcta-taaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttg 570  Q
    ||||||||||||| | | ||||||| | || |||||||||||||| ||| |||| || ||||||||||| |||||||| || ||||||||||||||||||    
T  29699996 tactaacaatctactcacaatcgaagttcagcaaaatttcataattgtccttattaaaactcatgatctctttaatttaatgtgcataatggtcattttg 29700095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 700 - 802
Target Start/End: Complemental strand, 31768027 - 31767924
Alignment:
Q  700 gccattatttttcccaccc-tatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggttttt 798  Q
    ||||||| ||||||||||| ||||  |||||| |||| ||||||  |||| ||||||| | ||||||||||||| |||||| | ||||||||||||||||    
T  31768027 gccattacttttcccacccctatgcgcttctcacgcgccctatttggattttaaaatccgaaatatttcaacgtgtttttgaaagttttatgaggttttt 31767928  T
Q  799 atgc 802  Q
    ||||    
T  31767927 atgc 31767924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 469 - 570
Target Start/End: Complemental strand, 43763276 - 43763181
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||      | || |||||||||||  |||||||||||| ||||| ||||||||    
T  43763276 atctactaacaatatataaaaattgaagtacaacaaaatttcataatcg------ttaaaactcatgatctccttaattttatatccataacggtcattt 43763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 699 - 787
Target Start/End: Complemental strand, 38091337 - 38091249
Alignment:
Q  699 agccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    |||||||| ||||| || ||| |||| ||||||||||||||||||||||||||||||  | ||||||||| ||| || ||| |||||||    
T  38091337 agccattacttttcacatcctgtgacgttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt 38091249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 469 - 552
Target Start/End: Complemental strand, 39313490 - 39313407
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttata 552  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| |||| |||| || ||| || ||||  |||||||||||    
T  39313490 atctactaacaatatataaaaatcgaaatccaataaaatttcataaccgtccttattaaaactaattatctccttaattttata 39313407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 469 - 575
Target Start/End: Original strand, 34903160 - 34903266
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||  | ||||||||||||| |  |  |||||||||||| ||||  ||| || ||| |||||||| |||||||||| ||||||||| ||||||    
T  34903160 atctactaaccgtatataaaaatcgaagtcgagtaaaatttcataaccgtccatattaaaacttatgatcttcttaattttatgtgcataatgatcattt 34903259  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  34903260 tgcaaaa 34903266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 46997735 - 46997666
Alignment:
Q  506 atttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattttgcaaaa 575  Q
    ||||||||||||||||| | || |||||||||||  |||||||||| |||||||| |||||||| |||||    
T  46997735 atttcataatcgtcttttttaaaactcatgatctcattaattttatgtgcataattgtcattttacaaaa 46997666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 470 - 569
Target Start/End: Complemental strand, 18208673 - 18208574
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||||||| ||||||| | ||| ||||| || |||||||||||||| |  | || |||||||||||  |||||||||| || ||||||||| ||||    
T  18208673 tctactaacaatatataaaagttgaagtacaataagatttcataatcgtcctctttaaaactcatgatctccttaattttatgtggataatggtcgtttt 18208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 607 - 672
Target Start/End: Original strand, 26247253 - 26247319
Alignment:
Q  607 gattggtgactcactag-ttgttaggaagaatctagaataatattgtcgatataagattttgtactc 672  Q
    ||||| ||||||||||| |||||||||||||  ||||||||||||  | ||||||||| ||||||||    
T  26247253 gattgatgactcactagcttgttaggaagaacatagaataatattaactatataagatattgtactc 26247319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 470 - 574
Target Start/End: Complemental strand, 29700593 - 29700492
Alignment:
Q  470 tctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||  || || | || ||||   ||||  |||| ||||  |||||||||||||||||    
T  29700593 tctactaacaatatataaaaatcgaagtttaacaaaatttcataattttccttgttaaaactc---atctccttaactttacgtgcataatggtcatttt 29700497  T
Q  570 gcaaa 574  Q
    |||||    
T  29700496 gcaaa 29700492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 794
Target Start/End: Complemental strand, 32556596 - 32556519
Alignment:
Q  717 cctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt-atgaggt 794  Q
    |||||||  ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||| ||||||||| |||||||    
T  32556596 cctatgagtttctcgcacgtcctattcggattttaaaatctgaaatattgtaacgtatttt-ggaggtttttatgaggt 32556519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 43473211 - 43473105
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||||| | | || |||||||| ||||| ||| || | || | |||| ||||| ||||||| || ||  |||||||| |||    
T  43473211 atctactaacaatatataaaaatcgtactccagcaaaattttataattgtcctttttaaaaatcattatcttcttaatttcatgtgtttaatggtctttt 43473112  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  43473111 tgcaaaa 43473105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 41770963 - 41771048
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataat 560  Q
    ||||||| |||||||||| || | || ||||||||||||||  || |||| || |||||| ||||| ||||||| || ||||||||    
T  41770963 taacaatatataaaaatcaaagtccaccaaaatttcataataatccttattaaaactcattatcttcttaatttaatgtgcataat 41771048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 787
Target Start/End: Complemental strand, 51907044 - 51906955
Alignment:
Q  700 gccattatttttcccaccctatgaccttctc-gcgcgtcctattcagattctaaaatctggaatatttcaacgt-atttttggaggtttt 787  Q
    ||||||| ||||||||||| |||| |||||| || || ||| || ||||||||||||| | ||||||||||| |  ||||||||||||||    
T  51907044 gccattacttttcccacccgatgagcttctcagcacgccctgtttagattctaaaatccgaaatatttcaacatgttttttggaggtttt 51906955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 701 - 800
Target Start/End: Original strand, 37267707 - 37267806
Alignment:
Q  701 ccattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttat 800  Q
    |||||| |||| ||||| ||||| ||||||| | | ||||||  |||||||||||| | ||||||| ||||| |||| |||||||||||||| |||||||    
T  37267707 ccattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttat 37267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 702 - 802
Target Start/End: Original strand, 5867900 - 5867999
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||| |||| || |||||| | ||||||||| |  |||||| |||| ||||||||| ||||||||||||| ||||||||| ||||||| || |||||||    
T  5867900 cattactttttccgccctataagcttctcgcgtgctctattc-gattttaaaatctgaaatatttcaacgtgtttttggagattttatgtgggttttatg 5867998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 705 - 801
Target Start/End: Original strand, 24166791 - 24166887
Alignment:
Q  705 tatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||||| |||||||||||  ||||| |||| ||||||| |||||| ||||  | ||||||||||| | ||||| |||||||||||  |||||||||    
T  24166791 tattttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggttttatggagtttttatg 24166887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 802
Target Start/End: Complemental strand, 10696452 - 10696366
Alignment:
Q  716 ccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatgc 802  Q
    ||||||||  |||||||||   ||||||  |||||||||||   |||||||||||||||||||| |||||||| | |||||||||||    
T  10696452 ccctatgaagttctcgcgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgc 10696366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 38858234 - 38858164
Alignment:
Q  499 caacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcatttt 569  Q
    |||||||||||||||||| || |||| || |||||||||||  ||||| | || |||||||||||||||||    
T  38858234 caacaaaatttcataatcttccttattaaaactcatgatctccttaatatcatgtgcataatggtcatttt 38858164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 475 - 548
Target Start/End: Original strand, 348297 - 348370
Alignment:
Q  475 taacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattt 548  Q
    ||||||| |||||||||| || | || |||||||||||||||||| |||| || |||||| ||||| |||||||    
T  348297 taacaatatataaaaatcaaagtccaccaaaatttcataatcgtccttattaaaactcattatcttcttaattt 348370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 737 - 801
Target Start/End: Original strand, 45203216 - 45203280
Alignment:
Q  737 cctattcagattctaaaatctggaatatttcaacgtatttttggaggttttatgaggtttttatg 801  Q
    ||||||| |||||||||||| | |||||||||| || ||||| ||||||||||| | ||||||||    
T  45203216 cctattcggattctaaaatccgaaatatttcaatgtgtttttcgaggttttatgggatttttatg 45203280  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 736 - 787
Target Start/End: Complemental strand, 13378477 - 13378426
Alignment:
Q  736 tcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    |||||||| |||| ||||||||| |||||||||| || ||||||||||||||    
T  13378477 tcctattcggattataaaatctgaaatatttcaatgtgtttttggaggtttt 13378426  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 469 - 575
Target Start/End: Complemental strand, 23212800 - 23212694
Alignment:
Q  469 atctactaacaatctataaaaatcgaaatacaacaaaatttcataatcgtctttatgaagactcatgatctttttaattttatatgcataatggtcattt 568  Q
    ||||||||||||| ||||||||| ||| | || ||||||||||| ||| ||  ||| || || ||  ||||| ||||||| || ||||| ||||| ||||    
T  23212800 atctactaacaatatataaaaattgaagttcatcaaaatttcattatcatccatattaaaacccactatcttcttaatttcatgtgcatgatggttattt 23212701  T
Q  569 tgcaaaa 575  Q
    |||||||    
T  23212700 tgcaaaa 23212694  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 787
Target Start/End: Original strand, 43050109 - 43050193
Alignment:
Q  702 cattatttttcccaccctatgaccttctcgcgcgtcctattcagattctaaaatctggaatatttcaacgtatttttggaggtttt 787  Q
    ||||| ||||||||||||||||  |||| || || | ||||| |||| ||||||||| ||| |||||||||  |||||||||||||    
T  43050109 cattacttttcccaccctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgt-gttttggaggtttt 43050193  T

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