View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_13 (Length: 412)
Name: NF2898_high_13
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 1250555 - 1250940
Alignment:
| Q |
11 |
catcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaaccnnnnnnnnnnnncttgtttatttctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1250555 |
catcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaacctttttttttt---ttgtttatttctt |
1250651 |
T |
|
| Q |
111 |
gatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1250652 |
gatttcacatatgttcaaatccttgatatccttctatgttaatattagatcatgtgtgattcaagacatttaagaactgttattgactttggctcctaaa |
1250751 |
T |
|
| Q |
211 |
tgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgagga-ggtacgtacgtttct |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
1250752 |
tgtgtgcaatggcgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacattgaggatcgtacgtacatttct |
1250851 |
T |
|
| Q |
310 |
acacattttgttcttatgttttcacttgataacacctatgctgctatggaatttcatagggattgacgtccaaaaacctccttgttgat |
398 |
Q |
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| T |
1250852 |
acacattttgttcttatgttttcacttggtaacatctatgctgctatggaatttcatagggattgacgtccaaaaacctccttgttgat |
1250940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 8269321 - 8269587
Alignment:
| Q |
11 |
catcatcaccaattcaccatcactatttagtgctctagtccctccatccaaatcacttcctcacaaacaaaaccnnnnnnnnnnnncttgtttatttctt |
110 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
8269321 |
catcatcaccaattcaccatcactaatta-tgctctagtca--------aaatcacttcctcacaaacaaaacactattttgatttcttgtttatttctt |
8269411 |
T |
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| Q |
111 |
gatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaa |
210 |
Q |
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|||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| |
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| T |
8269412 |
gatttcccatatgttcaaatccttgacttccttctattttaatat-agatcatgtgggattcaagacatttaggaactgttattgactttggctcccaaa |
8269510 |
T |
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| Q |
211 |
tgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaaca |
287 |
Q |
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| T |
8269511 |
tgcatgcaatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaaaca |
8269587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 8287812 - 8287898
Alignment:
| Q |
214 |
gtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgaggaggtacg |
300 |
Q |
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| T |
8287812 |
gtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacg |
8287898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 8275035 - 8275072
Alignment:
| Q |
300 |
gtacgtttctacacattttgttcttatgttttcacttg |
337 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
8275035 |
gtacatttctacacattttgttcttctgttttcacttg |
8275072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 26585307 - 26585364
Alignment:
| Q |
229 |
aagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaac |
286 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaaac |
26585364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 20507413 - 20507332
Alignment:
| Q |
124 |
ttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcc |
206 |
Q |
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| T |
20507413 |
ttcaaatccttgatatccttctatatgaata-taggtcaggtgggattcaagacatttaggaactgatgttgactttggctcc |
20507332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 17231896 - 17231932
Alignment:
| Q |
300 |
gtacgtttctacacattttgttcttatgttttcactt |
336 |
Q |
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|||| |||||||||||||||||||| ||||||||||| |
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| T |
17231896 |
gtacatttctacacattttgttcttctgttttcactt |
17231932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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