View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_14 (Length: 399)
Name: NF2898_high_14
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_14 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 36734394 - 36734021
Alignment:
| Q |
10 |
aatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctc |
109 |
Q |
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| T |
36734394 |
aatatccaataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctc |
36734295 |
T |
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| Q |
110 |
tccatcatagaatcaaacctgtccctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaa |
209 |
Q |
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| T |
36734294 |
tccatcatagaatcaaacctgtccctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaa |
36734195 |
T |
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| Q |
210 |
acttccccgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcgaaat |
309 |
Q |
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| T |
36734194 |
acttccccgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttgaaat |
36734095 |
T |
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| Q |
310 |
aacgttattcgacaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaa |
383 |
Q |
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| T |
36734094 |
aacgttattcgacaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaa |
36734021 |
T |
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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 19053 - 18973
Alignment:
| Q |
169 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
249 |
Q |
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|||||| ||||||||||||||||||||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
18973 |
T |
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