View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_15 (Length: 399)
Name: NF2898_high_15
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 39808159 - 39807777
Alignment:
| Q |
1 |
gtctcttcattttcccttgaaatgcttcctccaccacttcactctcctccggctattcttcctcgccgccgttaaacaacaacactcaaacaatgcaaga |
100 |
Q |
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| T |
39808159 |
gtctcttcattttcccttgaaatgcttcctccaccacttcactctcctccggcaattcttcctcgccgccgttaaacaacaacacccaaacaatgcaaga |
39808060 |
T |
|
| Q |
101 |
aactctccctcatcaacaccacaaaccaccttccaacaccctcctcctccgctcacgccgcataactccatctactctccctaacggcgacacctacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808059 |
aactctccctcatcaacaccacaaaccaccttccaacaccctcctcctccgctcacaccgcataactccatctactctccctaacggcgacacctacacc |
39807960 |
T |
|
| Q |
201 |
ggagccttatcaaataacaacacccctcacggcaccggaaaatacatctggtcagacggctgtgtatacggaggtgactggaaaaacggaaaaccaaacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39807959 |
ggagccttatcaaataacaacacccctcacggcaccggaaaatacatctggtcagacggctgtgtatacggaggtgactggaaaaacggaaaaccaaacg |
39807860 |
T |
|
| Q |
301 |
gtaaaggaagattcacctggccatcaggagcaacctacgaaggtgagttcatctccggtcgaatggaaggttttggttcattc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39807859 |
gtaaaggaagattcacctggccatcaggagcaacctacgaaggtgatttcatctccggtcgaatggaaggttttggttcattc |
39807777 |
T |
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