View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_31 (Length: 311)
Name: NF2898_high_31
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 54878183 - 54878464
Alignment:
| Q |
14 |
agggataagataagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagctactgcaac |
113 |
Q |
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| T |
54878183 |
agggataagataagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagctactgcaac |
54878282 |
T |
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| Q |
114 |
tctactcagcttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcatacaaacataga |
213 |
Q |
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| T |
54878283 |
tctactcagcttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcatacaaacataga |
54878382 |
T |
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| Q |
214 |
cccatttccaaaacccaccgtttatccatcaacgccgcaatttcacgcacaaagaaagaagaaacagttgaaaccgtaaaag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878383 |
cccatttccaaaacccaccgtttatccatcaacgccgcaatttcacgcacaaagaaagaagaaacagttgaaaccgtaaaag |
54878464 |
T |
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