View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2898_high_36 (Length: 274)
Name: NF2898_high_36
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_36 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 17104796 - 17104531
Alignment:
| Q |
13 |
cagacatgatttaatatattagctacatcaacaaata----atgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggtn |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17104796 |
cagacatgatttaatatattagctacatcaacaaatattgtatgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggta |
17104697 |
T |
|
| Q |
109 |
nnnnnntgttcctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtataagcaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
17104696 |
aaaaattgttcctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtgtaaacaca |
17104597 |
T |
|
| Q |
209 |
aatgaagaaaaaagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17104596 |
aatgaagaaaaaagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggt |
17104531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University