View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2898_high_38 (Length: 267)
Name: NF2898_high_38
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 43599608 - 43599441
Alignment:
| Q |
18 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43599608 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
43599509 |
T |
|
| Q |
118 |
gacttattgttagttatataccggcggtactacaaaatcttactgtttgtactttttctttcgtctga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43599508 |
gacttattgttagttatataccggcggtacaacaaaatcttactgtttgtactttttctttcgtctga |
43599441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 43605100 - 43604933
Alignment:
| Q |
18 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43605100 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
43605001 |
T |
|
| Q |
118 |
gacttattgttagttatataccggcggtactacaaaatcttactgtttgtactttttctttcgtctga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43605000 |
gacttattgttagttatataccggcggtacaacaaaatcttactgtttgtactttttctttcgtctga |
43604933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 43610592 - 43610425
Alignment:
| Q |
18 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43610592 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
43610493 |
T |
|
| Q |
118 |
gacttattgttagttatataccggcggtactacaaaatcttactgtttgtactttttctttcgtctga |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43610492 |
gacttattgttagttatataccggcggtacaacaaaatcttactgtttgtactttttctttcgtctga |
43610425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 43588873 - 43588807
Alignment:
| Q |
185 |
accaccactacccaccatggctagtatctcaattttccgacgacctttatccgatgacatcgttctg |
251 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43588873 |
accaccactacccaccatggccagtatctcaatttcccgacgacctttatccgatgacatcgttctg |
43588807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 55338782 - 55338945
Alignment:
| Q |
18 |
gatactacatagtctcatcaattgtttactgtacaacgagttggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55338782 |
gatactacatagtctcatcaattgtttactgtacaacgagttggaccacagaacagacattttttcatcctatttaattggaagtattatattcggcatt |
55338881 |
T |
|
| Q |
118 |
gacttattgttagttatataccggcggtactacaaaatcttactgtttgtactttttctttcgtctga |
185 |
Q |
| |
|
|||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55338882 |
gacttatt----gttatatacagacggtacaacaaaatcttactgtttgtactttttctttcgtctga |
55338945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University