View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_4 (Length: 581)
Name: NF2898_high_4
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 43131658 - 43131129
Alignment:
| Q |
19 |
ctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttctccatgtttaactcattcatgttattcattatgttctta |
118 |
Q |
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| T |
43131658 |
ctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttctccatgtttaactcattcatgttattcattatgttctta |
43131559 |
T |
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| Q |
119 |
gcagagtccaattccttccagaatgaatcgtaacgatgaggaatactgcnnnnnnnnnnnnnnnntaacaagttcaataaatatttcctccgtctcatta |
218 |
Q |
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| T |
43131558 |
gcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg-------taaaacaaaataacaagttcaatatatatttcctccgtctcatt- |
43131467 |
T |
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| Q |
219 |
taagtgtctcattttagttgtacgtaattcattcatatatatatgcaacaaacctggcaagtcgagtatagaacaattgtttggctagtgattggcactt |
318 |
Q |
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| T |
43131466 |
-------------ttagttgtacgtaattcattcatatatat--gcaacaaacctggcaagtcgagtatagaacaattgtttggccagtgattgacactt |
43131382 |
T |
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| Q |
319 |
ttcaatagtaggtggttcttggacatagtgtttgttcctctccatcaacagcttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtc |
418 |
Q |
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| T |
43131381 |
ttcaatagtaggtggttcttggacatggtgtttgttcctctccatcaacagcttgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtc |
43131282 |
T |
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| Q |
419 |
gcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaattatattaagatatataaggttcaaaaatttattcaaatctcatcatt |
518 |
Q |
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| T |
43131281 |
gcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaattatattaagatatatatgggtcaaaaatttattcaaatctcatcatt |
43131182 |
T |
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| Q |
519 |
ctgtttttcttttaaatttccacacacaaaccttgctgtatgagtcacctttg |
571 |
Q |
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| T |
43131181 |
ctgtttttcttttaaatttccacacacaaaccttgttgtatgagtcacctttg |
43131129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 43130508 - 43130447
Alignment:
| Q |
409 |
tgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
470 |
Q |
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| T |
43130508 |
tgcttgagtcacctttaattgcagctgaggaatctttgaagtcattagttcactatacaaaa |
43130447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 33931910 - 33931946
Alignment:
| Q |
205 |
cctccgtctcattataagtgtctcattttagttgtac |
241 |
Q |
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| T |
33931910 |
cctccgtttcattataagtgtctcatttgagttgtac |
33931946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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