View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_44 (Length: 258)
Name: NF2898_high_44
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28595527 - 28595285
Alignment:
| Q |
1 |
tacatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595527 |
tacatcagcttttgctttatcaataacttggaaacctcttacagaattaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagc |
28595428 |
T |
|
| Q |
101 |
aaaattgatgcatcacaaccctgtaaattaattaagatcaatt-aactaattaatatgatcataatgaatactttatatgattaatcaaaatacatgtat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595427 |
aaaattgatgcatcacaaccctgtaaattaattaagatcaattaaactaattaatatgatcataatgaatactttatatgattaatcaaaatacatgtat |
28595328 |
T |
|
| Q |
200 |
agaattaatatactaattacctggacaaaacaatcatgaaaat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595327 |
agaattaatatactaattacctggacaaaacaatcatgaaaat |
28595285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 32493738 - 32493545
Alignment:
| Q |
2 |
acatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagca |
101 |
Q |
| |
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|||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32493738 |
acattagcttttgctttatcaataacttcaaatcctcttacagagttaatatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagca |
32493639 |
T |
|
| Q |
102 |
aaattgatgcatcacaaccctgtaaattaa-ttaag-----atcaattaactaat-taatatgatcataatgaatactttatatgattaatcaa |
188 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
32493638 |
aaattgatgcatcacaaccctgtaaattaatttaagatcttatcaataaactaatataatatgatcataatgaatactttatatggttaatcaa |
32493545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 28587283 - 28587411
Alignment:
| Q |
5 |
tcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaa |
104 |
Q |
| |
|
|||| ||||||||||||||| | || || |||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||| | || || | ||||| |
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| T |
28587283 |
tcagattttgctttatcaatgatttcaaatcctcttactgagttaacatttggacgtgcactcttttcgctctcgattgtggaactatcatccaacaaaa |
28587382 |
T |
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| Q |
105 |
ttgatgcatcacaaccctgtaaattaatt |
133 |
Q |
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||||||||||||||||||| ||||||||| |
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| T |
28587383 |
ttgatgcatcacaaccctgcaaattaatt |
28587411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 28592469 - 28592587
Alignment:
| Q |
5 |
tcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaa |
104 |
Q |
| |
|
|||| ||||||||||||||| | || || |||||||| ||||||| ||| ||||||||| ||||||| ||||| ||||| | |||| || | ||||| |
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| T |
28592469 |
tcagattttgctttatcaatgatttcaaatcctcttactgagttaatattaggaagtgcattcttttcgctctcgattgtaggactgtcatccaacaaaa |
28592568 |
T |
|
| Q |
105 |
ttgatgcatcacaaccctg |
123 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
28592569 |
ttgatgcatcacatccctg |
28592587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 242
Target Start/End: Complemental strand, 32493538 - 32493507
Alignment:
| Q |
211 |
actaattacctggacaaaacaatcatgaaaat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
32493538 |
actaattacctggacaaaacaatcatgaaaat |
32493507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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