View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_high_51 (Length: 250)

Name: NF2898_high_51
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_high_51
NF2898_high_51
[»] chr4 (3 HSPs)
chr4 (2-184)||(28104500-28104680)
chr4 (1-78)||(29864880-29864957)
chr4 (119-188)||(8497425-8497493)
[»] chr1 (4 HSPs)
chr1 (1-188)||(29313654-29313841)
chr1 (1-149)||(47026522-47026657)
chr1 (4-53)||(23276347-23276396)
chr1 (1-45)||(8123766-8123810)
[»] chr7 (2 HSPs)
chr7 (1-188)||(21948422-21948609)
chr7 (1-151)||(48488583-48488741)
[»] chr2 (4 HSPs)
chr2 (1-151)||(18112800-18112949)
chr2 (1-68)||(16112976-16113043)
chr2 (1-68)||(16319549-16319616)
chr2 (16-188)||(18763897-18764059)
[»] chr8 (1 HSPs)
chr8 (1-151)||(43723793-43723942)
[»] chr3 (1 HSPs)
chr3 (39-188)||(39995466-39995614)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 28104680 - 28104500
Alignment:
Q  2 atttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctacac 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  28104680 atttaatttatttcaattaaaatgaaaagatagtcaacttaattaaattaaggaaacactgcatttagtactgttaattacaatggtgattcttctacac 28104581  T
Q  102 acaacaaaccatttcctttcatttgtttttctttgaaactctttgaatcannnnnnnnaatccacttgtttcctttcatatct 184  Q
    ||||||||   |||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||    
T  28104580 acaacaaa-tgtttcctttcatttgtttttctttggaactctttgaatca-tttttttaatccacttgtttcctttcatatct 28104500  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29864957 - 29864880
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaa 78  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||   ||||||||||||||||||    
T  29864957 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatatggaaacgatgcatttagtactgttaa 29864880  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 8497493 - 8497425
Alignment:
Q  119 ttcatttgtttttctttgaaactctttgaatcannnnnnnnaatccacttgtttcctttcatatcttaac 188  Q
    |||||||||||||||||| ||||||||||||||        |||||||||||||||||| ||||||||||    
T  8497493 ttcatttgtttttctttggaactctttgaatca-tttttttaatccacttgtttccttttatatcttaac 8497425  T

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Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 29313841 - 29313654
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||| ||||||||||||||    
T  29313841 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatatggaaacgctgcatttagtactgttaattacaatggtgatccttctaca 29313742  T
Q  101 cacaacaaaccatttcctttcatttgtttttctttgaaactctttgaatca-nnnnnnnnaatccacttgtttcctttcatatcttaac 188  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||||         ||||||||| |||||||||||||||||||    
T  29313741 cacaacaaa-cgtttcctttcatttgtttttctttggaactctttgaatcatttttttttaatccacttatttcctttcatatcttaac 29313654  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 47026522 - 47026657
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||            ||| ||||||| ||||||||||||||    
T  47026522 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagggaaacactg------------ttagttacaatggtgatccttctaca 47026609  T
Q  101 cacaacaaaccatttcctttcatttgtttttctttgaaactctttgaat 149  Q
     |||||||||  |||||||||||||||||||||||| ||||||||||||    
T  47026610 tacaacaaacg-tttcctttcatttgtttttctttggaactctttgaat 47026657  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 23276396 - 23276347
Alignment:
Q  4 ttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataag 53  Q
    |||||||| |||||||||||| ||||| | |||||||||||| |||||||    
T  23276396 ttaatttacttcaattaaaattaaaagttggtcaacttaattaaaataag 23276347  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8123810 - 8123766
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaatt 45  Q
    ||||||||||| |||||||||| ||||||| || |||||||||||    
T  8123810 catttaatttacttcaattaaagtgaaaagttaatcaacttaatt 8123766  T

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Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 21948609 - 21948422
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||| |||||||||||| ||||||||||||||    
T  21948609 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagagaaacactgcatttagtacagttaattacaatggtgatccttctaca 21948510  T
Q  101 cacaacaaaccatttcctttca-tttgtttttctttgaaactctttgaatcannnnnnnnaatccacttgtttcctttcatatcttaac 188  Q
    ||||||||| | |||||||||| |||||||||||||| ||||||||||||||        ||||||||||||||||||| |||||||||    
T  21948509 cacaacaaa-cgtttcctttcattttgtttttctttggaactctttgaatcattttttttaatccacttgtttcctttcgtatcttaac 21948422  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 48488583 - 48488741
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||| ||||| | ||| ||||||||||||||| |||||||||||| |||| ||||||||    
T  48488583 catttaatttacttcaattaaaataaaaagataatcaacttaattaaaataggaaaacactgcatttagtactcttaattacaataatgattcttctaca 48488682  T
Q  101 caca----acaaacca----tttcctttcatttgtttttctttgaaactctttgaatca 151  Q
    ||||    | ||| ||    |||||||||||||||||||||||| |||||||| |||||    
T  48488683 cacaaaataaaaaacaagtgtttcctttcatttgtttttctttggaactctttaaatca 48488741  T

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Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 18112949 - 18112800
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||  ||||||| ||||||||||||||| ||||||||||||||    
T  18112949 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagggaaacacaacatttagcactgttaattacaatggtgatccttctaca 18112850  T
Q  101 cacaacaaaccatttcctttcatttgtttttctttgaaactctttgaatca 151  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  18112849 cacaacaaa-catttcctttcatttgtttttctttggaactctttgaatca 18112800  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16112976 - 16113043
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcattta 68  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||| ||||||| ||| | ||||||||    
T  16112976 catttaatttatttcaatcaaagtgaaaagttagtcaacttaattaaaataagaaaacattgcattta 16113043  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16319616 - 16319549
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcattta 68  Q
    |||||||||||| ||||| ||| ||||||| |||||||||||||| |||||||  || ||||||||||    
T  16319616 catttaatttatctcaatcaaagtgaaaagttagtcaacttaattaaaataagataacactgcattta 16319549  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 18763897 - 18764059
Alignment:
Q  16 aattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctacacacaacaaaccattt 115  Q
    |||||||||||||||||||||||||||||| ||||| | |||   ||||          |||||||||||  | |||||||||||| |||||   |  ||    
T  18763897 aattaaaatgaaaagatagtcaacttaattaaaataggaaaacgttgca---------cttaattacaatgattatccttctacacccaaca---cgctt 18763984  T
Q  116 cctttcatttgtttttctttgaaactc--tttgaatcannnnnnnnaatccacttgtttcctttcatatcttaac 188  Q
     |||||||||||||||||||| |||||  |||||||||        |||||||||||||||||||||||||||||    
T  18763985 tctttcatttgtttttctttggaactctttttgaatcattttttttaatccacttgtttcctttcatatcttaac 18764059  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 43723793 - 43723942
Alignment:
Q  1 catttaatttatttcaattaaaatgaaaagatagtcaacttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctaca 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||   ||||||||||||||||||||||||| ||||||||||||||    
T  43723793 catttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagggaaacgatgcatttagtactgttaattacaatggtgatccttctaca 43723892  T
Q  101 cacaacaaaccatttcctttcatttgtttttctttgaaactctttgaatca 151  Q
    ||||||||| | |||||||||||||||||||||||  ||||||||||||||    
T  43723893 cacaacaaa-cgtttcctttcatttgtttttcttttgaactctttgaatca 43723942  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 39995466 - 39995614
Alignment:
Q  39 cttaattgaaataaggaaatactgcatttagtactgttaattacaatagtgatccttctacacacaacaaaccatttcctttcatttgtttttctttgaa 138  Q
    ||||||| ||||| |||||   ||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||| |    
T  39995466 cttaattaaaatagggaaacggtgcatttagtactgttaattacaatggtgatccttctacacacaacaaa-ggtttcctttcatttgtttttctttgga 39995564  T
Q  139 actctttgaatcannnnnnnnaatccacttgtttcctttcatatcttaac 188  Q
    |||||||||||||        |||||||||||||||||| ||||||||||    
T  39995565 actctttgaatcattttttttaatccacttgtttccttttatatcttaac 39995614  T

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