View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_54 (Length: 249)
Name: NF2898_high_54
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7750713 - 7750943
Alignment:
| Q |
1 |
cttttcgatacagctctaaattctcttaacaatttcaagactccaatttcacaatcaccactagtaaatttgttaagtgccaatctatccttttgatcag |
100 |
Q |
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| T |
7750713 |
cttttcgatacagctctaaattctcttaacaatttcaagactccaatttcacaatcaccactagtaaatttgttaagtcccaatctatccttttgatcag |
7750812 |
T |
|
| Q |
101 |
caagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagatagcgtcacatctttccctttgatcgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7750813 |
caagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagatagcgtcgcatctttccctttgatcgtgc |
7750912 |
T |
|
| Q |
201 |
atcagtagcaatcacatcgaatagttgctct |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7750913 |
atcagtagcaatcacatcgaatagttgctct |
7750943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 6590695 - 6590537
Alignment:
| Q |
73 |
ttaagtgccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagat |
172 |
Q |
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|||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
6590695 |
ttaagtcccaatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctagcttcaaatcctcgattaataaaacgtgaaagaa |
6590596 |
T |
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| Q |
173 |
agcgtcacatctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctct |
231 |
Q |
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| T |
6590595 |
agcgtcgtatcttgccctttggttgtgcgtcatcagcaatcacatccaatagttgctct |
6590537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 6917808 - 6917951
Alignment:
| Q |
75 |
aagtgccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagatag |
174 |
Q |
| |
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|||| |||||||||||| || || ||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| || |
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| T |
6917808 |
aagtcccaatctatcctgtttctctgcaagaaactctaccttctgtatcaatgcttcaatcctagcctcaaatcctcgattactaaaaagtgaaagaaag |
6917907 |
T |
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| Q |
175 |
cgtcacatctttccctttgatcgtgcatcagtagcaatcacatc |
218 |
Q |
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|| |||| | ||||||| | |||| ||||||| ||||||||| |
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| T |
6917908 |
tgttgcatcctgccctttggttgtgcgtcagtagaaatcacatc |
6917951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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