View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_56 (Length: 247)
Name: NF2898_high_56
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_56 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 12020710 - 12020527
Alignment:
| Q |
52 |
ccgatacattaaaatcatttgaaactcgatataaatagcaatgtatatagtatatggttatagaaaaaggaaataaatttgtgaataaataatgaaaatg |
151 |
Q |
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| T |
12020710 |
ccgatacgttaaaatcatttgaaactcgatataaatagcaatgtatat-------ggttatagaaaaaggaaataaatttgtgaataaataatgaaaatg |
12020618 |
T |
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| Q |
152 |
gaatttgagcttgccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattg |
242 |
Q |
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| T |
12020617 |
gaatttgagcttgccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattg |
12020527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 12020918 - 12020882
Alignment:
| Q |
17 |
aaccctcatgctagttcaatctccctgaaatgaatcc |
53 |
Q |
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| T |
12020918 |
aaccctcatgctagttcaatctccccgaaatgaatcc |
12020882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 8474181 - 8474258
Alignment:
| Q |
165 |
ccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattg |
242 |
Q |
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|||||||||| ||||||||||| || |||||| |||||||| ||||||||||| || |||| | ||||||||||| |
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| T |
8474181 |
ccttggagttgatttgaagagaaggatgacgaggtggttctttggaataatctgatggtgctgttaatcctggcattg |
8474258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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