View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_6 (Length: 494)
Name: NF2898_high_6
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 48492214 - 48491745
Alignment:
| Q |
16 |
tttttgtggcctctgtaagcactaatcttaaactaagttttcaaggtttcttgtttaaatttctttccacattttgcttagtgtattannnnnnn-gaca |
114 |
Q |
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| T |
48492214 |
tttttgtggcctctgtaagcactaatcttaaactaagttttcaaggtttcttgtttaaatttctttccacattttgcttagtgtattattttttttgaca |
48492115 |
T |
|
| Q |
115 |
ggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcattttctgatgatgctgaattgcttaaaagtgcttgtggaaag |
214 |
Q |
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| T |
48492114 |
ggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcatttgctgatgatgccgaattgcttaaaagtgcttgtggaaag |
48492015 |
T |
|
| Q |
215 |
tcacttgcttctttccctcaaggtacaataacttcttctatcatggaaattagtccatttgagtcaaaacttgcttcagctcgactttatttgataagaa |
314 |
Q |
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| T |
48492014 |
tcacttgcttctttccctcaaggtacaataacttcttctatcatggaaattagtccatttgagtcaaaacttgcttcagctcgactttatttgataagaa |
48491915 |
T |
|
| Q |
315 |
tttgtcctgctcggactcaagtttgacatgaacattatttttctactgaagtttgaatcaattcaagcccactaactgctccatcagttcgacttgttta |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48491914 |
tttgtcctgctcggactcaagtttgacatgaacattatttttctactcaagtttgaatcaattcaagcccactaactgctccatcagttcgacttgttta |
48491815 |
T |
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| Q |
415 |
ttagattaactgtacgttgtatcgagttcaatgaactacttgttgaatcatgttttgaactaattctgtg |
484 |
Q |
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| T |
48491814 |
ttagattaattgtacgttgtatcgagttcaatgaactacttgttgaatcatgttttgaactgattctgtg |
48491745 |
T |
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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 7795196 - 7795320
Alignment:
| Q |
114 |
aggatcaatttggtaaggtaccactattttggggaataactgctgatggatatgcagcattttctgatgatgctgaattgcttaaaagtgcttgtggaaa |
213 |
Q |
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|||| |||| ||| ||||| || |||| ||||||||||||||||||||| |||| ||| ||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
7795196 |
aggaccaatctggaaaggttcctctatattggggaataactgctgatggctatgtagcctttgctgatgatgctgatttgcttaaaggtgcttgtggaaa |
7795295 |
T |
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| Q |
214 |
gtcacttgcttctttccctcaaggt |
238 |
Q |
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| T |
7795296 |
gtcacttgcttctttccctcaaggt |
7795320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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