View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_61 (Length: 234)
Name: NF2898_high_61
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25037430 - 25037209
Alignment:
| Q |
1 |
ttaaatttaggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttatt |
100 |
Q |
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| T |
25037430 |
ttaaatttaggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttatt |
25037331 |
T |
|
| Q |
101 |
atatttcatctgcaatcaagtaaatagaacatctctctacttacttcatattgaatcacattattttcacactctatacttatttagttt-cttttccta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||| |
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| T |
25037330 |
atatttcatctgcaatcaagtaaatagaacatctctcttcttatttcatattgaatcacattattttcacactttatccttacttagtttcctttttcta |
25037231 |
T |
|
| Q |
200 |
tctctaatccattattattttt |
221 |
Q |
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||||||||| |||||||||||| |
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| T |
25037230 |
tctctaatctattattattttt |
25037209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 25016142 - 25015971
Alignment:
| Q |
6 |
tttaggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttattatatt |
105 |
Q |
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| T |
25016142 |
tttaggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtt |
25016043 |
T |
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| Q |
106 |
tcatctgcaatcaagtaaatag-aacatctctctacttacttcatattgaatcacattattttcacactcta |
176 |
Q |
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| T |
25016042 |
tcatctgcaatcaagtaaatagcaccatctctctacttatttgatattgaatcacattattttcacactcta |
25015971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 4623406 - 4623315
Alignment:
| Q |
25 |
aatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttattatatttcatctgcaat |
116 |
Q |
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| T |
4623406 |
aatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat |
4623315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 4598920 - 4598810
Alignment:
| Q |
8 |
taggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttattatatttc |
107 |
Q |
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| T |
4598920 |
taggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgactactattatcgtcatctatattatgtttc |
4598821 |
T |
|
| Q |
108 |
atctgcaatca |
118 |
Q |
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| T |
4598820 |
ttctgcaatca |
4598810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 25044981 - 25044877
Alignment:
| Q |
19 |
gagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttattatatttcatctgcaatca |
118 |
Q |
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||||| ||||||||||| || || |||||||| | || || |||||| |||||| |||||||||||| | ||| |||||||| || | ||||||||| |
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| T |
25044981 |
gagttcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatcttcaaactgcaatca |
25044882 |
T |
|
| Q |
119 |
agtaa |
123 |
Q |
| |
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||||| |
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|
| T |
25044881 |
agtaa |
25044877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 18805598 - 18805690
Alignment:
| Q |
26 |
atgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatggacatatttattatatttcatctgcaatca |
118 |
Q |
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|||||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||| |||| | ||| ||||||| || |||||||||||| |
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| T |
18805598 |
atgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatca |
18805690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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