View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_66 (Length: 227)
Name: NF2898_high_66
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_66 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 5033526 - 5033305
Alignment:
| Q |
7 |
attcaaacattaaatgttgacacatttttccatcaagataaacactttgatttgtcacaattctgctagcattgatt-tgtgtgtatatgtgtgtaatat |
105 |
Q |
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| T |
5033526 |
attcaaacattaaatgttgacacatttttccatggaaataaaaactttgatttgtcacaattctgctagcattgattgtgtgtatgtatgtgtccaatat |
5033427 |
T |
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| Q |
106 |
tgcacttgttagagcatagaaaagtgcttttgctactaagaaagtgaacgtgcgaatgttcaagacttagtcgagcataagcgaggcacttcgagttagc |
205 |
Q |
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| T |
5033426 |
tgcacttgttagggcatagagaagtgcttttgctactaagatagcaaacatgcgaatgtttaagacttagtcgagcgtaagagaggcacttcaagttagc |
5033327 |
T |
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| Q |
206 |
gaagtgttgtagtagcgccaaa |
227 |
Q |
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| T |
5033326 |
gaagtgttgtaatagcgccaaa |
5033305 |
T |
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Target: scaffold0101 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 44933 - 44987
Alignment:
| Q |
127 |
aagtgcttttgctactaagaaagtgaacgtgcgaatgttcaagacttagtcgagc |
181 |
Q |
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| T |
44933 |
aagtgcttttgctactgagaaagcgaacgtgcgaaggttcaagacttagccgagc |
44987 |
T |
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