View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2898_high_68 (Length: 220)
Name: NF2898_high_68
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_68 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 41703722 - 41703543
Alignment:
| Q |
27 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41703722 |
aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
41703623 |
T |
|
| Q |
127 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcatttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41703622 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcatttt |
41703543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 41467414 - 41467604
Alignment:
| Q |
22 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatgg---------attt |
112 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||| ||| ||| ||||||||| ||| || |
|
|
| T |
41467414 |
gctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcagggcccctgatgaacttggctcttcaatcttc |
41467513 |
T |
|
| Q |
113 |
gcggtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcatttt |
206 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||| |||| || |||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
41467514 |
acagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatcatc---gtcaaggtttatgatctcaatctcatttt |
41467604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
| Q |
27 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
89 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41513161 |
aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41513223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
| Q |
27 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
89 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41522096 |
aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41522158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 41506911 - 41506970
Alignment:
| Q |
22 |
gctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg |
81 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| |
|
|
| T |
41506911 |
gctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg |
41506970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University