View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_8 (Length: 478)
Name: NF2898_high_8
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 46448599 - 46448130
Alignment:
| Q |
1 |
atatttcaggtcacaatcacatgacaactcactgtgcatccaagagtaacagtatttagggataccttcatgatgtactcaaccacaagatttgtttcct |
100 |
Q |
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| T |
46448599 |
atatttcaggtcacaatcacatgacaactcactgtgcatccaagagtaacagtatttagggataccttcatgatgtactcaaccacaagatttgtttcct |
46448500 |
T |
|
| Q |
101 |
gtccaccgagagctaatgactgcaaaatgcatcttgagtagattaatttgtgtccatgaatgcagtttacaatgtttattttgaaaaggnnnnnnnncga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46448499 |
gtccaccgagagctaatgactgcaaaatgcatcttgagtagattaatttgtgtccatgaatgcagtttacaatgtttattttgaaaaggaaaaaaaacga |
46448400 |
T |
|
| Q |
201 |
gatattttcccattaaagggaagnnnnnnngaatgagtatgtgccttcatgaataaatcaaggtcttcatcaggttttattccagcattcttttctcttc |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46448399 |
gatattttcccattaaagggaagaaaaaaagaatgagtatgtgccttcatgaataaatcaaggtcttcatcaggttttattccagcattcttttctcttc |
46448300 |
T |
|
| Q |
301 |
tagcaagttccatcaacatatctggtaagacaccagaatttagtaatcagcctctaaaagaacaaattgagaataagttaacatgattacnnnnnnncac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46448299 |
tagcaagttccatcaacatatctggtaagacaccagaatttagtaatcagcctctaaaagaacaaattgagaataagttaacatgattacaaaaaaacac |
46448200 |
T |
|
| Q |
401 |
accgaatttaaatccagctccttgacagcaaccagcaaactggagagtttccctcacagtcatctctgct |
470 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46448199 |
accgaatttaaatccagcgccttgacagcaaccagcaaactggagagtttccctcacagtcatctctgct |
46448130 |
T |
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