View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_high_9 (Length: 461)
Name: NF2898_high_9
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 41775119 - 41774670
Alignment:
| Q |
8 |
aagcataggaacaaaaatgccaccaccaccaacaccgccaacggttccaaaagcagatcctagaaaaccaataattgaggccaaagcaagtctccaacta |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41775119 |
aagcatgggaacaaaaatgccaccaccaccaacaccaccaacggttccaaaagcagatcctagaaaaccaataattgaggccaaagcaagtctccaacta |
41775020 |
T |
|
| Q |
108 |
ggcttcaattcctgcaagcaataaacaaagagttaatgtttttaaccgcaaaaacgacttattcgataaaataaactagctgagaacgtgtgagtaacat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41775019 |
ggcttcaattcctgcaagcaataaacaaagagttaatgtttttaaccgcacaaacgacttattcgataaaataaactacctgagaacgtgtgagtaacat |
41774920 |
T |
|
| Q |
208 |
acgggccaagttttatcggttatggatccgtaagagccatgg------------agagatgaatttttgtggtcattggtattttgggtgaggtaaagag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41774919 |
acgggccaagttttatcggttatggatccgtaagagccatggagttgaagggatagagatgaatttttgtggtcattggtattttgggtgaggtaaagag |
41774820 |
T |
|
| Q |
296 |
cggagagaaccgcgaatgagaaaccggatacgaggtagacgatgaatgttttggtggaaaaggacatagtggtcaattaggaatttctggaacaacaaca |
395 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41774819 |
cggagagaaccgcgactgagaaaccggatacgaggtagacgatgaatgttttggtggaaaaggacatagtggtcaattaggaatttctggaacaacaaca |
41774720 |
T |
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| Q |
396 |
aaagacacagaggtagtaacgttgttatggcatgtgtcgtgtgtccttca |
445 |
Q |
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| T |
41774719 |
aaagacacagagggagtaacgttgttatagcatgtgtcgtgtgtccttca |
41774670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 26959433 - 26959548
Alignment:
| Q |
8 |
aagcataggaacaaaaatgccaccaccaccaacaccgccaacggttccaaaagcagatcctagaaaaccaataattgaggccaaagcaagtctccaacta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| | ||||||||||| || ||||||| ||||| |||||||| |
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| T |
26959433 |
aagcataggaacaaaaatgccaccaccaccaacaccaccaacggttccacatgctgatccaaaaaaaccaataactgtggccaaaacaagtttccaacta |
26959532 |
T |
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| Q |
108 |
ggcttcaattcctgca |
123 |
Q |
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|| | ||||||||||| |
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| T |
26959533 |
ggttccaattcctgca |
26959548 |
T |
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