View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_11 (Length: 472)
Name: NF2898_low_11
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 40517441 - 40517893
Alignment:
| Q |
17 |
attttctacatatgggacaagtggaatgtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtc |
116 |
Q |
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| T |
40517441 |
attttctacatatgggacaagtggaatgtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtc |
40517540 |
T |
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| Q |
117 |
actttctttataatctcctaagcaaatagagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaa |
216 |
Q |
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| T |
40517541 |
actttctttataatctcctaagcaaatagagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaa |
40517640 |
T |
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| Q |
217 |
cttgtgtcggtgtgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggtggaaaaccagacaaaatattgagaatgtttcgacttcgtg |
316 |
Q |
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| T |
40517641 |
cttgtgtcggtgtgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggtggaaaaccggacaaaatattgagaatgtttcgacttcgtg |
40517740 |
T |
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| Q |
317 |
aactacgaagtcgaacacatgcaataactattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
416 |
Q |
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| T |
40517741 |
aactacgaagtcgaacacatgcaataactattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
40517840 |
T |
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| Q |
417 |
gttgttgttgttgtgtggaggttccgaggtgccgttgttgatgatgtccatct |
469 |
Q |
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| T |
40517841 |
gttgttgttgttgtgtggaggttccgaggtgccgttgttgtcgatgttcatct |
40517893 |
T |
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