View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_15 (Length: 420)

Name: NF2898_low_15
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_15
NF2898_low_15
[»] chr3 (5 HSPs)
chr3 (11-403)||(25900616-25901006)
chr3 (330-377)||(5934514-5934561)
chr3 (39-98)||(25908707-25908766)
chr3 (205-260)||(25909068-25909121)
chr3 (262-311)||(25909164-25909214)
[»] chr7 (1 HSPs)
chr7 (330-377)||(27858766-27858813)
[»] chr4 (3 HSPs)
chr4 (338-387)||(5983891-5983940)
chr4 (347-384)||(10468404-10468441)
chr4 (361-403)||(10475565-10475607)
[»] chr1 (1 HSPs)
chr1 (330-387)||(50645164-50645221)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 25900616 - 25901006
Alignment:
Q  11 cacagatcaatgtactatgaatattgaaatagaaaattgagaagagatctgatctttaactccaacagaagttaagaataggtctgatacaatttcgacg 110  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||    
T  25900616 cacaaatcaatgtactatgaatattgaaaaagaaaattgagaagagagctgatctttaactgcaacagaagttaagaaaaggtctgatacaatttcggcg 25900715  T
Q  111 ggttaatttgacttctttnnnnnnnnnnnnnnnnnggttaggctaaactcacaaaccatctgctatcaaagtaacacatgcannnnnnnnnnnaaatagt 210  Q
    ||||| ||||||||||||                 ||||| ||||||||||||||||||||||| |||||||||||||||||           |||||||    
T  25900716 ggttagtttgacttctttaaaaataaaaataaaaaggttatgctaaactcacaaaccatctgctgtcaaagtaacacatgcattttttttt--aaatagt 25900813  T
Q  211 gcattcaaaacctagcattttattgaaaagtgttttttaaaatttcaattcataagtaactcccttcttttgtggtttacctttccagagaacaaaataa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25900814 gcattcaaaacctagcattttattgaaaagtgttttttaaaatttcaattcataagtaactcccttcttttgtggtttacctttccagagaacaaaataa 25900913  T
Q  311 acaactgaattggttaggtcatcccacaaaaaattcacacaatctattattataaactgacaaggattttaaagcaagtaagcaatatacatg 403  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25900914 acaactgaattggttaggtcatcccacaaaatattcacacaatctattattataaactgacaaggattttaaagcaagtaagcaatatacatg 25901006  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 5934561 - 5934514
Alignment:
Q  330 catcccacaaaaaattcacacaatctattattataaactgacaaggat 377  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  5934561 catcacacaaaatattcacacaatctattattataaactgacaaggat 5934514  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 25908707 - 25908766
Alignment:
Q  39 atagaaaattgagaagagatctgatctttaactccaacagaagttaagaataggtctgat 98  Q
    ||||||| ||||||||||  |||||||||||||  ||||||||||||||| |||| ||||    
T  25908707 atagaaagttgagaagagggctgatctttaactataacagaagttaagaaaaggtttgat 25908766  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 25909068 - 25909121
Alignment:
Q  205 aatagtgcattcaaaacctagcattttattgaaaagtgttttttaaaatttcaatt 260  Q
    |||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||    
T  25909068 aatagtgcattcaaaatctagca-tttattgaaaagtg-tttttgaaatttcaatt 25909121  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 25909164 - 25909214
Alignment:
Q  262 ataagtaactcccttcttttgtggttta-cctttccagagaacaaaataaa 311  Q
    |||||||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  25909164 ataagtaactcccttcttttatggtttaccctatccatagaacaaaataaa 25909214  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 27858766 - 27858813
Alignment:
Q  330 catcccacaaaaaattcacacaatctattattataaactgacaaggat 377  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  27858766 catcacacaaaatattcacacaatctattattataaactgacaaggat 27858813  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 5983891 - 5983940
Alignment:
Q  338 aaaaaattcacacaatctattattataaactgacaaggattttaaagcaa 387  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  5983891 aaaatattcatacattctattattataaactgacaaggattttatagcaa 5983940  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 10468441 - 10468404
Alignment:
Q  347 acacaatctattattataaactgacaaggattttaaag 384  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10468441 acacaatctattattataaactgaaaaggattttaaag 10468404  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 10475607 - 10475565
Alignment:
Q  361 tataaactgacaaggattttaaagcaagtaagcaatatacatg 403  Q
    |||||| ||||||||||||||| |||||||||||| |||||||    
T  10475607 tataaattgacaaggattttaaggcaagtaagcaacatacatg 10475565  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 50645164 - 50645221
Alignment:
Q  330 catcccacaaaaaattcacacaatctattattataaactgacaaggattttaaagcaa 387  Q
    |||| ||||||| ||||||||  |||| |||||| |||||||||||||||||||||||    
T  50645164 catcacacaaaatattcacacgttctactattattaactgacaaggattttaaagcaa 50645221  T

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