View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_16 (Length: 419)
Name: NF2898_low_16
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 7360684 - 7360518
Alignment:
| Q |
218 |
tagaacgcccaatttcatggatttccagtgttatgctaatatttgctattttcataagcaagaggctttaagtttgagatactaaaaacaatacacatct |
317 |
Q |
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| T |
7360684 |
tagaacgcccaatttcatggatttccagtgttatgctaatatttgctattttcataagcaagaggctttaagtttgagatactaaaaacaatacacatct |
7360585 |
T |
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| Q |
318 |
tttattgtaactcatatgccactctatttttcttactcgtttgcagtgcatgcataaattaaaattc |
384 |
Q |
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| T |
7360584 |
tttattgtaactcatatgccactctatttttcttactcgtttgcaatgcatgcataaattaaaattc |
7360518 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 1004450 - 1004405
Alignment:
| Q |
9 |
caagaatattgttaggaagaagatgaagattctgaagaactagatt |
54 |
Q |
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| T |
1004450 |
caagagtattgttaggtagaagatgaagattctgaagaactagatt |
1004405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 986339 - 986297
Alignment:
| Q |
59 |
acagaacaatttatgaagataaagaaaaaagtattatattgta |
101 |
Q |
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| T |
986339 |
acagaacaatttgtgaagttaaagaaacaagtattatattgta |
986297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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