View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_17 (Length: 417)
Name: NF2898_low_17
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 42342187 - 42341799
Alignment:
| Q |
18 |
aaaatgtgtcacaaaggagtcacattaacaatataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaa |
117 |
Q |
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| T |
42342187 |
aaaatgtgtcacaaaggagtcacattaacaatataatggcaaatattaaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaa |
42342088 |
T |
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| Q |
118 |
ttgacatattaccaattcttcttaaactaatgttaccttcaatagcatataaatataatgttgtattatcttgatcatatatacataagaatttcaaata |
217 |
Q |
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| T |
42342087 |
ttgacatattaccaattcttcttaaactaatgttaccttcaatagcatataaatataatgctgtattatcttgatcatatatacataagaatttcaaata |
42341988 |
T |
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| Q |
218 |
attcatacatttgtggatacataattttagatttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactc |
317 |
Q |
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| T |
42341987 |
attcatacatttgtggatacataattttaga-ttaagtataatatgattggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactc |
42341889 |
T |
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| Q |
318 |
tctattcttgatcatcctcctctgccttctctccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcat |
407 |
Q |
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| T |
42341888 |
tctattcttgatcatcctcctctgccttctctccaccaccctttcaacaggaccatcaaccatcctctttcttcctcgtaaaccattcat |
42341799 |
T |
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