View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_2 (Length: 1005)
Name: NF2898_low_2
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 445 - 987
Target Start/End: Complemental strand, 9781316 - 9780774
Alignment:
| Q |
445 |
ctgaatataccaattcatatcttatcttattttcgtcttttcnnnnnnnagttagtaatttgagaatgttgaaaatcacaattttattatcttatcttct |
544 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
9781316 |
ctgaatataccaattcatatcttatcttattt-cgtcttttctttttttatttagtaacttgagaatgttgaaaatcacaattttcttatcttatcttct |
9781218 |
T |
|
| Q |
545 |
atatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatatttcaaacaaagacatattttaatttctactttgatttttcc |
643 |
Q |
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|||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9781217 |
atattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatattccaaacaaagacatattttaatttctactttgatttttcc |
9781118 |
T |
|
| Q |
644 |
tttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctgatagatttggctacat |
743 |
Q |
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| T |
9781117 |
tttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctgatagatttgccttcat |
9781018 |
T |
|
| Q |
744 |
tatttatactcttactccatgctatccttttcttctaggttcaatttcagttgctacgccacattgttgtgaagcagtgaaggaagttgatgatgacgcc |
843 |
Q |
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| T |
9781017 |
tatttatactcttactccatgctatccttttcttataggttcaatttcagttgctacgccacattgttgtgaagcagtgaaggaagttgatgatgacgcc |
9780918 |
T |
|
| Q |
844 |
aaagactatgatgatcgtctagaaacttgtgactgcttgaaagatatggctctttcttttaagaaggatttcaatgttgaaaatggtgctgcactctttg |
943 |
Q |
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| T |
9780917 |
aaagactatgatgatcgtctagaaacttgtgactgcttgagagatatggctctttcttttaagaaggatttcaatgttgaaaatggtgctgcactctttg |
9780818 |
T |
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| Q |
944 |
ccttatgtggtattcaaacaccctaccagatttctcgtgatatc |
987 |
Q |
| |
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| T |
9780817 |
ccttatgtggtattcaaacaccctaccagatttctcgagatatc |
9780774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 50048461 - 50048042
Alignment:
| Q |
18 |
cttttatcttgacaccaaatagttacttcactctgtcttgatttttgtctcctagatttactttcagttttgtttaataggacaagcaatggctgaacaa |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50048461 |
cttttatcttgacactaaatagttacttcactctgtcttgatttttgtctcctagatttactttcagttttgtttaataggacaagcaatggctgaacaa |
50048362 |
T |
|
| Q |
118 |
ttcaaggacaccaaaaactatgaaatatatacttcgtattgttcctctattttctcatgattattgcgttttcataataggtatgtcaaacatttattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50048361 |
ttcaaggacaccaaaaactatgaaatatatacttcgtattgttcctctattttctcatgattattgcgttttcataataggtatgtcaaacatttattct |
50048262 |
T |
|
| Q |
218 |
tccccatggatctagcttccactctgccatttcagcagatataccaacttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50048261 |
tccccatggatctagcttccactctgccatttcagcagatataccaacttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacat |
50048162 |
T |
|
| Q |
318 |
gcttagactctggcgattgaggcgtgttagtgagctcttctcaaggtatatttctttgggatatttttgtggttataaaagacattatacgtatgttctg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50048161 |
gcttagactctggcgattgaggcgtgttagtgagctcttctcaaggtatatttctttaggatatttttgtggttataacagacattatacgtatgttctg |
50048062 |
T |
|
| Q |
418 |
ctatttcccacaggttctgc |
437 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
50048061 |
ctatttcccacatgttctgc |
50048042 |
T |
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