View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_22 (Length: 374)
Name: NF2898_low_22
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 289521 - 289391
Alignment:
| Q |
16 |
ggttggtttcttaa-gaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatttatttgtactcctaaat |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
289521 |
ggttggtttcttaaagaaatataatggttggttaacagttttattctgcattaattgtgcatttcagtttatctcatcatatttatttgtactcctaaat |
289422 |
T |
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| Q |
115 |
attgtcttattgaacttgctatacattatta |
145 |
Q |
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| T |
289421 |
attgtcttattgaacttgctatacattatta |
289391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 289287 - 289172
Alignment:
| Q |
249 |
caatatcatgtcgttgcattttaatggatttaaacccgctaccggtcccaactaatcagaatgaaatattttataagcaaagccatgccatcattgtcat |
348 |
Q |
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||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
289287 |
caataccatgtcgttgcattttaatggatttaaacccgtcactgctcccaactaatcagaatgaaatattttataagcaaagccatgccattattgtcat |
289188 |
T |
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| Q |
349 |
tacactttatctctct |
364 |
Q |
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|||||||||||||||| |
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| T |
289187 |
tacactttatctctct |
289172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 24531256 - 24531129
Alignment:
| Q |
16 |
ggttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaaat |
114 |
Q |
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||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||| |
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| T |
24531256 |
ggttggttttgtaaaaaatttaatggttggttaacagttttattctgcattaattgtgcactagagtttagctcatcatattatatttgtactcctaaat |
24531157 |
T |
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| Q |
115 |
attgtcttattgaacttgctatacatta |
142 |
Q |
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|||||| |||||||||| |||||||||| |
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| T |
24531156 |
attgtcctattgaactttctatacatta |
24531129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 24523831 - 24523704
Alignment:
| Q |
16 |
ggttggtttcttaagaaatataatggttggttaacagttttattctgcattaattgtgcatttgagtttatctcatcatatt-tatttgtactcctaaat |
114 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||| |
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| T |
24523831 |
ggttggttttgtaaaaaatttaatagttggttaacagttttattctgcattaactgtgcactagagtttagctcatcatattatatttgtactcctaaat |
24523732 |
T |
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| Q |
115 |
attgtcttattgaacttgctatacatta |
142 |
Q |
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|||||| ||||| ||| |||||||||| |
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| T |
24523731 |
attgtcctattgccctttctatacatta |
24523704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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