View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_24 (Length: 370)
Name: NF2898_low_24
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 19270247 - 19270583
Alignment:
| Q |
19 |
ccaacacaatcacttctaaaccaactggtttgttattttcgtcctttctagctaaagacacgtccttttctatgttggtgagaaaatcgactttgannnn |
118 |
Q |
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| T |
19270247 |
ccaacacaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttc |
19270346 |
T |
|
| Q |
119 |
nnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19270347 |
tttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttg |
19270446 |
T |
|
| Q |
219 |
atcttgttctctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttca |
318 |
Q |
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| T |
19270447 |
atcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttca |
19270546 |
T |
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| Q |
319 |
ctcttctttctgcgtaagacatgcttcgaccttcatc |
355 |
Q |
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| T |
19270547 |
ctcttctttctgcgtgagacatgcttctaccttcatc |
19270583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 81 - 355
Target Start/End: Complemental strand, 1587497 - 1587223
Alignment:
| Q |
81 |
tccttttctatgttggtgagaaaatcgactttgannnnnnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaacaattttttac |
180 |
Q |
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| T |
1587497 |
tccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttac |
1587398 |
T |
|
| Q |
181 |
ccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
280 |
Q |
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||| |||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1587397 |
acatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatg |
1587298 |
T |
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| Q |
281 |
nnnnnnnggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtaagacatgcttcgaccttcatc |
355 |
Q |
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| T |
1587297 |
tttttttggtttgatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
1587223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 81 - 355
Target Start/End: Original strand, 1590726 - 1591000
Alignment:
| Q |
81 |
tccttttctatgttggtgagaaaatcgactttgannnnnnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaacaattttttac |
180 |
Q |
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||||||||||||| |||||||||||||||||||| || || |||||| ||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
1590726 |
tccttttctatgtcggtgagaaaatcgactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttac |
1590825 |
T |
|
| Q |
181 |
ccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
280 |
Q |
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| T |
1590826 |
acatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatg |
1590925 |
T |
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| Q |
281 |
nnnnnnnggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtaagacatgcttcgaccttcatc |
355 |
Q |
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| T |
1590926 |
tttttttggtttgatcttcttcgtggtctttggtttaacacttctttccgcataaaacatgctgctaccttcatc |
1591000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 327
Target Start/End: Complemental strand, 1580924 - 1580751
Alignment:
| Q |
154 |
tgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggcca |
253 |
Q |
| |
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|||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||| |
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| T |
1580924 |
tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg |
1580825 |
T |
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| Q |
254 |
aggtgatgacaaattttccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttcactcttcttt |
327 |
Q |
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| T |
1580824 |
aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttt |
1580751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 327
Target Start/End: Original strand, 1603891 - 1604064
Alignment:
| Q |
154 |
tgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggcca |
253 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||| |
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| T |
1603891 |
tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg |
1603990 |
T |
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| Q |
254 |
aggtgatgacaaattttccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttcactcttcttt |
327 |
Q |
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| T |
1603991 |
aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttt |
1604064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 280
Target Start/End: Original strand, 39616026 - 39616178
Alignment:
| Q |
128 |
cattaatagacgattttggtcatctttgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttc |
227 |
Q |
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|||||| |||||| ||||| | || | || |||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
39616026 |
cattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaactccttgatcttgttc |
39616125 |
T |
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| Q |
228 |
tctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
280 |
Q |
| |
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| | | |||||| ||||||||| |||| | | |||||||| ||||||||| |
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| T |
39616126 |
ttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg |
39616178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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