View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_28 (Length: 350)
Name: NF2898_low_28
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 39 - 327
Target Start/End: Original strand, 390303 - 390591
Alignment:
| Q |
39 |
aaatttaatagacgaacaaacacaattataatttaataaaatcagaaatataataaacaaactcaattgtatcattaccattagaagggtcacgttctcg |
138 |
Q |
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| T |
390303 |
aaatttaatagacgaacaaacacaattataatttaataaaatcagaaatataataaacaaactcaattgtatcattaccattagaagggtcacgttctcg |
390402 |
T |
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| Q |
139 |
atatggtcgactcatacaaataatgatacatatgagccaagaccatccctccccacaaccacattcaccatagtcaagtccatcaacgtctcaacgaata |
238 |
Q |
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| T |
390403 |
atatggtcgactcatgcaaataatgatacatatgagccaagaccatcccttcccacaaccacattcaccatagtcaagtccatcaacgtctcaacgaata |
390502 |
T |
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| Q |
239 |
tcaactcaatatgtatgttcgtcttattagcgaacaacgtacaattaaggagatataacaaaaaacttcgaacacaacactgcatacgc |
327 |
Q |
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| T |
390503 |
tcaactcaatgtgtatgttcgtcttatcagcgaacaacgtacaatcaaggagatataacaaaaaacttcgaacacaacactgcatacgc |
390591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 390243 - 390289
Alignment:
| Q |
1 |
gctttattaaatttagaaatttaatagacaaacaaacaaaatttaat |
47 |
Q |
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| T |
390243 |
gctttattaaattcagaagtttaatagacaaacaaacaaaatttaat |
390289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 390169 - 390212
Alignment:
| Q |
39 |
aaatttaatagacgaacaaacacaattataatttaataaaatca |
82 |
Q |
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| T |
390169 |
aaatttaatagacgaacaaacacaatcataatttattaaaatca |
390212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 390217 - 390275
Alignment:
| Q |
42 |
tttaatagacgaacaaacacaattataatttaataaaatcagaaatataataaacaaac |
100 |
Q |
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|||||||||||||||||||||||||| |||| |||| |||||| | ||||| |||||| |
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| T |
390217 |
tttaatagacgaacaaacacaattatgctttattaaattcagaagtttaatagacaaac |
390275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 12974483 - 12974400
Alignment:
| Q |
235 |
aatatcaactcaatatgtatgttcgtcttattagcgaacaacgtacaattaaggagatataacaaaaaacttcgaacacaacac |
318 |
Q |
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|||||||||||||| ||||||||| |||||| ||||||||||||||| || ||||||| || |||||||| |||||||||| |
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| T |
12974483 |
aatatcaactcaatgtgtatgttcatcttatcagcgaacaacgtacacccgagaagatatagcataaaacttctaacacaacac |
12974400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 18559197 - 18559149
Alignment:
| Q |
39 |
aaatttaatagacgaacaaacacaattataatttaataaaatcagaaat |
87 |
Q |
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|||||||||| | || ||||||||||||||||||||||||||| |||| |
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| T |
18559197 |
aaatttaataaatcaaaaaacacaattataatttaataaaatcacaaat |
18559149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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