View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_29 (Length: 346)
Name: NF2898_low_29
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 8304024 - 8303851
Alignment:
| Q |
13 |
aaaatatttaaaggcaaattctaggtactagccatctctnnnnnnnt-agagaccataaacaaagagcacaattagtattaagtaacccaaaaatacaaa |
111 |
Q |
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| T |
8304024 |
aaaatatttaaaggcaaattataggtactagccatctctaaacaaaacagagaccataaacagggagcacagtcagtatttagtaacccaaaaatacaaa |
8303925 |
T |
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| Q |
112 |
aacgcgaacaacatatatgaaaagttaaagcatattacaccattcatcattttgaacgaatatgaaatcaatgt |
185 |
Q |
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| T |
8303924 |
aacacgaacaacatatatgaaaagttaaagcagattacaatattcaccattttgaataaatatgaaatcaatgt |
8303851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 8303769 - 8303708
Alignment:
| Q |
267 |
gaaggaggcaatctagttacgttttagttcattttgaattagaagaaccatgtaactattgag |
329 |
Q |
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| T |
8303769 |
gaaggaggtaatctagttacattt-agttcattttgaaccagaagaaccatgtaactattgag |
8303708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 20767005 - 20767168
Alignment:
| Q |
17 |
tatttaaaggcaaattctaggtactagccatctctnnnnnnnt-agagaccataaacaaagagcacaattagtattaagtaacccaaaaatacaaaaacg |
115 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||| ||| | || ||||||| | |||| | ||||||| |||| ||||||| |
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| T |
20767005 |
tatttaaaggcaaatcctaggtactagccatctctaaacaaaacagagaccacaaatagagtgcacaatcaatattcactaacccataaatgaaaaaacg |
20767104 |
T |
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| Q |
116 |
cgaacaacatatatgaaaagttaaagcatattacaccattcatcattttgaacgaatatgaaat |
179 |
Q |
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| T |
20767105 |
cgaacaacatatctgaaaagttaaagcagattaaatcattcaccatttcgaacgaatatgaaat |
20767168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 20767256 - 20767317
Alignment:
| Q |
267 |
gaaggaggcaatctagttacgttttagttcattttgaattagaagaaccatgtaactattgag |
329 |
Q |
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||||||| ||||||||||| || | |||||| |||||| |||| ||||||||||||||||||| |
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| T |
20767256 |
gaaggagacaatctagttaggtgt-agttcaatttgaactagatgaaccatgtaactattgag |
20767317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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