View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_3 (Length: 884)

Name: NF2898_low_3
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_3
NF2898_low_3
[»] chr8 (10 HSPs)
chr8 (162-403)||(34741975-34742216)
chr8 (18-167)||(34742302-34742451)
chr8 (458-552)||(19430733-19430826)
chr8 (458-552)||(19436175-19436268)
chr8 (458-552)||(19566882-19566975)
chr8 (458-552)||(19572324-19572417)
chr8 (458-552)||(31031256-31031349)
chr8 (458-552)||(33616064-33616157)
chr8 (458-552)||(13584870-13584968)
chr8 (57-119)||(34751817-34751879)
[»] chr3 (5 HSPs)
chr3 (458-553)||(13022749-13022843)
chr3 (458-553)||(53120221-53120315)
chr3 (458-552)||(33088616-33088709)
chr3 (458-552)||(38436270-38436363)
chr3 (458-523)||(20811112-20811177)
[»] chr1 (13 HSPs)
chr1 (593-836)||(11979994-11980237)
chr1 (461-557)||(38734829-38734924)
chr1 (458-553)||(26650427-26650521)
chr1 (458-552)||(13891505-13891598)
chr1 (458-552)||(14582448-14582541)
chr1 (652-856)||(11953785-11953989)
chr1 (458-552)||(5602170-5602263)
chr1 (465-552)||(39746674-39746760)
chr1 (458-552)||(31289455-31289547)
chr1 (66-119)||(11980881-11980934)
chr1 (458-552)||(12179406-12179494)
chr1 (458-552)||(10106741-10106835)
chr1 (227-308)||(11954460-11954541)
[»] scaffold0132 (2 HSPs)
scaffold0132 (458-553)||(2420-2514)
scaffold0132 (458-553)||(10380-10474)
[»] chr7 (7 HSPs)
chr7 (461-552)||(28291842-28291932)
chr7 (458-553)||(24529090-24529184)
chr7 (458-552)||(9973969-9974062)
chr7 (458-552)||(33227019-33227113)
chr7 (461-552)||(7358037-7358127)
chr7 (493-552)||(10437398-10437456)
chr7 (493-552)||(10451108-10451166)
[»] chr6 (4 HSPs)
chr6 (458-552)||(19478838-19478931)
chr6 (458-521)||(14450626-14450689)
chr6 (458-552)||(10485799-10485890)
chr6 (458-552)||(17289607-17289697)
[»] chr2 (3 HSPs)
chr2 (458-552)||(42915263-42915356)
chr2 (458-552)||(5089778-5089872)
chr2 (459-552)||(39959865-39959952)
[»] chr4 (4 HSPs)
chr4 (458-552)||(10119806-10119899)
chr4 (461-552)||(24490797-24490882)
chr4 (458-552)||(653688-653782)
chr4 (485-554)||(8082771-8082837)
[»] scaffold0011 (2 HSPs)
scaffold0011 (458-552)||(2326-2420)
scaffold0011 (458-552)||(7580-7674)
[»] chr5 (3 HSPs)
chr5 (458-552)||(13581981-13582075)
chr5 (458-498)||(14374824-14374864)
chr5 (458-495)||(7805773-7805810)
[»] scaffold0067 (1 HSPs)
scaffold0067 (458-552)||(33305-33392)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 162 - 403
Target Start/End: Complemental strand, 34742216 - 34741975
Alignment:
Q  162 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaattaattttaagtcagatgatagcaatggcgttgggatcaag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  34742216 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaatt----ttaagtcagatgatagcaatggcgttgggatcaag 34742121  T
Q  262 tggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 361  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742120 tggtgtgcccaaaccccagttgacattttggaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 34742021  T
Q  362 tagaaaagcc----tagcagctcaatacttgcaggtatctgtccaa 403  Q
    ||||||||||    ||||||||||||||||||||||||||||||||    
T  34742020 tagaaaagcctagctagcagctcaatacttgcaggtatctgtccaa 34741975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 34742451 - 34742302
Alignment:
Q  18 cagtaccatatagcttcttgttacacagttttataccatatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcat 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742451 cagtaccatatagcttcttgttacacagttttattccatatggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcat 34742352  T
Q  118 atcattataacatgatttcaagtataacatgatcaaacctttgtctccca 167  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34742351 atcattataacatgatttcaagtataacatgatcaaacatttgtctccca 34742302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 19430733 - 19430826
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19430733 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 19436175 - 19436268
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19436175 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 19566882 - 19566975
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19566882 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19566975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 19572324 - 19572417
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19572324 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 31031256 - 31031349
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31031256 atgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttcttatccaa-ttttctcattagatttaactagtgttccaaca 31031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 33616157 - 33616064
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  33616157 atgtgagacatttttaagccacatactcacactagttcttatattgtatttttcttatccaa-ttttctcactagatttaactaatgttccaaca 33616064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 13584870 - 13584968
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-----tttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||     |||||||||||||| |||||||| |||||||||||||||||||||||    
T  13584870 atgtgggacatttttaaatcacacgctcacactaattcttatattgtgttttttttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 34751879 - 34751817
Alignment:
Q  57 atggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 119  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34751879 atggcacaaaaaccttcagccattccctagttgctatgttgtaagtaaacatatgatacatat 34751817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 458 - 553
Target Start/End: Original strand, 13022749 - 13022843
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13022749 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 13022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 458 - 553
Target Start/End: Original strand, 53120221 - 53120315
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  53120221 atgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 53120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 33088709 - 33088616
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33088709 atgtgggacatttttaagtcacacactcacactagttcttacattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 38436363 - 38436270
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  38436363 atgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactggtgctccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 20811112 - 20811177
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttt 523  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20811112 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 593 - 836
Target Start/End: Complemental strand, 11980237 - 11979994
Alignment:
Q  593 ccatcttttcataaaagggtcatagatagctccatatttgttctctccaaaggttgtataaaaccatggattttcttgtgagacttgatcaaaatgctga 692  Q
    ||||||||||||| |||||||||| || ||| |||| |  |  |||||||| ||||||||||| ||||||||||| |||||||||||| || ||  ||||    
T  11980237 ccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatggattttcctgtgagacttgagcacaaaactga 11980138  T
Q  693 taaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaaaattatggcaattggaagtcgtgcaagcacaaactcaaata 792  Q
     |||| || || ||| ||| ||| |||||||||||  ||||||||  ||| ||||||| |||| || |||| |||||||||||||| |||  ||||||||    
T  11980137 gaaaaactctgtgagcttatcaagttattccattgctgacatacagcgcggaagcgaataattgtgacaatgggaagtcgtgcaagaacattctcaaata 11980038  T
Q  793 gatcttcaggaaatgttccccaaatttctggttccataaattca 836  Q
    |||||||||||||| || ||||||||| ||||| ||||| ||||    
T  11980037 gatcttcaggaaatttttcccaaatttgtggtttcataacttca 11979994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 461 - 557
Target Start/End: Original strand, 38734829 - 38734924
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacactggt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  38734829 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacaatggt 38734924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 26650521 - 26650427
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26650521 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 26650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 13891505 - 13891598
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  13891505 atgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 14582448 - 14582541
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  14582448 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 652 - 856
Target Start/End: Complemental strand, 11953989 - 11953785
Alignment:
Q  652 aaaaccatggattttcttgtgagacttgatcaaaatgctgataaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaa 751  Q
    |||||||||||||| |||||||||||| |  | | |||||| |||| ||||||||||||| |||||||||||||||  | |||||| | || || |  |     
T  11953989 aaaaccatggatttacttgtgagactttagaacattgctgagaaaaactttgagaggttatcaaattattccattgctggcatacagtacggaaacatat 11953890  T
Q  752 aattatggcaattggaagtcgtgcaagcacaaactcaaatagatcttcaggaaatgttccccaaatttctggttccataaattcaacaatacatgacatt 851  Q
    |||| |||| || ||||||||||||||||||| |||||||||||||||||| ||  || ||||||||||||||| ||||| ||||   |||||||||| |    
T  11953889 aattttggccatgggaagtcgtgcaagcacaacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacact 11953790  T
Q  852 ctaga 856  Q
    |||||    
T  11953789 ctaga 11953785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 5602263 - 5602170
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| ||||||||||||||||    
T  5602263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 465 - 552
Target Start/End: Complemental strand, 39746760 - 39746674
Alignment:
Q  465 acatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  39746760 acatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 39746674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 31289455 - 31289547
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  31289455 atgtgggacatttttaagtcacacactcacactagttcttacattgtg-ttttcttatccaa-ttttctcactagattcaactagtgttccaaca 31289547  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 11980934 - 11980881
Alignment:
Q  66 gaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 119  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  11980934 gaaccgtcaaccattccctagttgctatgttgtaaataatcatacgatacatat 11980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 12179406 - 12179494
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||| ||| |||||||||||||||||    ||||||||||| |||||||||||| |||||||||||| | | |||| |||||||| |||||||||    
T  12179406 atgtaggatatttttaagtcacacac----actagttcttacattgtgtttttc-tatccaattttt-ttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 10106741 - 10106835
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgt-gtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||||  ||||||||||| ||| | ||  || |||| |  ||| |||||||| |||||| ||||||||||||||||    
T  10106741 atgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattattctcaatcaa-ttttctcactagattgaactagtgttccaaca 10106835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 11954541 - 11954460
Alignment:
Q  227 ttaagtcagatgatagcaatggcgttgggatcaagtggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttc 308  Q
    |||||||||||||  |||| |||  | |||||||||| |||| |||||||||||||||||| |  ||||||  |||||||||    
T  11954541 ttaagtcagatgaatgcaacggcacttggatcaagtgttgtgtccaaaccccagttgacgtatcacaagaactaatcccttc 11954460  T

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Target: scaffold0132 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 2514 - 2420
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  2514 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 10474 - 10380
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  10474 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 10380  T

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Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 461 - 552
Target Start/End: Complemental strand, 28291932 - 28291842
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28291932 tgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatccaa-ttttctaattagatttaactagtgttccaaca 28291842  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 458 - 553
Target Start/End: Original strand, 24529090 - 24529184
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 553  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24529090 atgtaggatatttttaagtcacacactcacactagttcttatattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 24529184  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 9973969 - 9974062
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  9973969 atgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 9974062  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 33227019 - 33227113
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttttt-cttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  33227019 atgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttccttatccaa-ttttctcactagatttaactagtgttccaaca 33227113  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 7358037 - 7358127
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  7358037 tgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttcttatccaa-ttttctcaaaagattcaactagtgttccaaca 7358127  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 552
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  493 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 552
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  493 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 19478838 - 19478931
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  19478838 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 14450689 - 14450626
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatt 521  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14450689 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt 14450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 10485799 - 10485890
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||| ||||||||||||| |||||  ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  10485799 atgtggaacatttttaagtctcacac--acactagttcttacattgtgtttttct-atccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 17289697 - 17289607
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  17289697 atgtgggacatttttaagtcacacac--acactagttcttacattgtgtttttc-tatccaa-ttttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 42915263 - 42915356
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  42915263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 5089778 - 5089872
Alignment:
Q  458 atgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| || ||| |||||||||| |||||    
T  5089778 atgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 39959865 - 39959952
Alignment:
Q  459 tgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||| |||||||||||    | ||||||||||||||| |||||| ||||||| |||  ||| |||||||||||| ||||||||||    
T  39959865 tgtgggacattttttaagtcacacac----aatagttcttatattgtatttttc-tatccaacttt--tcactagatttaactactgttccaaca 39959952  T

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Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 10119899 - 10119806
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  10119899 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcacgagattcaactagtgttccaaca 10119806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 24490797 - 24490882
Alignment:
Q  461 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||| ||||||    ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  24490797 tgggacatttttaagttacacac----actagttcttacattgtgtttttct-atccaatttt-ctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 653688 - 653782
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  653688 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 8082837 - 8082771
Alignment:
Q  485 cacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacact 554  Q
    |||||||||||||| || |||||||||| |||||| ||||| |  |||| ||||||||||||||||||||    
T  8082837 cacactagttcttacatagtgtttttct-atccaacttttcac--tagaattaactagtgttccaacact 8082771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 2326 - 2420
Alignment:
Q  458 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  2326 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 458 - 552
Target Start/End: Original strand, 7580 - 7674
Alignment:
Q  458 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  7580 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 13582075 - 13581981
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  13582075 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 14374824 - 14374864
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttctta 498  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  14374824 atgtgggacatttttaagtcacacaaccacactagttctta 14374864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Original strand, 7805773 - 7805810
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttc 495  Q
    |||||||||||||||||||||||||  |||||||||||    
T  7805773 atgtgggacatttttaagtcacacaaccacactagttc 7805810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 458 - 552
Target Start/End: Complemental strand, 33392 - 33305
Alignment:
Q  458 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 552  Q
    |||||||||||||||||||||||    |||||||||||||| |||||||||||| |||||||||||  ||| |||| ||||||||| ||||||||    
T  33392 atgtgggacatttttaagtcaca----cacactagttcttacattgtgtttttc-tatccaatttt--tcactagaattaactagtattccaaca 33305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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