View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_30 (Length: 344)

Name: NF2898_low_30
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_30
NF2898_low_30
[»] chr8 (22 HSPs)
chr8 (76-344)||(6862681-6862949)
chr8 (218-344)||(6873350-6873476)
chr8 (121-200)||(6873504-6873582)
chr8 (26-75)||(61454-61503)
chr8 (26-75)||(1365829-1365878)
chr8 (26-75)||(39255751-39255800)
chr8 (26-75)||(44751608-44751657)
chr8 (26-86)||(39254776-39254836)
chr8 (27-75)||(41859310-41859358)
chr8 (29-75)||(44752572-44752618)
chr8 (27-68)||(37639718-37639759)
chr8 (27-75)||(5034898-5034946)
chr8 (27-75)||(34992264-34992312)
chr8 (27-76)||(5035276-5035325)
chr8 (27-75)||(32536708-32536756)
chr8 (27-75)||(42345394-42345442)
chr8 (28-76)||(43924489-43924537)
chr8 (26-75)||(62239-62288)
chr8 (26-75)||(25876521-25876570)
chr8 (38-75)||(44098432-44098469)
chr8 (27-75)||(7054090-7054138)
chr8 (27-75)||(43433811-43433859)
[»] chr2 (18 HSPs)
chr2 (26-75)||(5276465-5276514)
chr2 (27-75)||(21471017-21471065)
chr2 (27-75)||(21471954-21472002)
chr2 (27-76)||(14573260-14573309)
chr2 (27-75)||(4479702-4479750)
chr2 (27-75)||(13134318-13134366)
chr2 (27-75)||(37547998-37548046)
chr2 (26-68)||(33433159-33433201)
chr2 (35-75)||(14574007-14574047)
chr2 (28-75)||(43789430-43789477)
chr2 (29-75)||(41042542-41042588)
chr2 (29-75)||(45139692-45139738)
chr2 (39-75)||(1164788-1164824)
chr2 (27-75)||(20991287-20991335)
chr2 (27-75)||(32471939-32471987)
chr2 (27-75)||(37546564-37546612)
chr2 (27-75)||(38834387-38834435)
chr2 (27-75)||(38834636-38834684)
[»] chr1 (30 HSPs)
chr1 (26-75)||(35616774-35616823)
chr1 (27-75)||(16270207-16270255)
chr1 (27-75)||(23440865-23440913)
chr1 (27-75)||(51974437-51974485)
chr1 (27-75)||(51987827-51987875)
chr1 (30-75)||(35615767-35615812)
chr1 (26-75)||(37874064-37874113)
chr1 (27-75)||(193850-193898)
chr1 (27-75)||(9948887-9948935)
chr1 (27-75)||(43737978-43738026)
chr1 (27-75)||(48972445-48972493)
chr1 (27-75)||(51988464-51988512)
chr1 (29-75)||(48869769-48869815)
chr1 (26-75)||(37822472-37822521)
chr1 (26-75)||(48870752-48870801)
chr1 (27-75)||(8560839-8560887)
chr1 (27-75)||(43737729-43737777)
chr1 (27-75)||(48971705-48971753)
chr1 (27-68)||(1012554-1012595)
chr1 (27-76)||(23440616-23440665)
chr1 (27-68)||(30780984-30781025)
chr1 (27-75)||(9947995-9948043)
chr1 (27-75)||(11031431-11031479)
chr1 (27-75)||(11032219-11032267)
chr1 (27-75)||(16271148-16271196)
chr1 (27-75)||(29334214-29334262)
chr1 (27-75)||(38930312-38930360)
chr1 (27-75)||(43316357-43316405)
chr1 (27-75)||(50827091-50827138)
chr1 (27-75)||(51975227-51975275)
[»] chr6 (16 HSPs)
chr6 (26-78)||(9574570-9574622)
chr6 (27-75)||(7193338-7193386)
chr6 (27-75)||(33480628-33480676)
chr6 (27-70)||(22582479-22582522)
chr6 (27-70)||(22587310-22587353)
chr6 (27-76)||(24125971-24126020)
chr6 (27-68)||(33018416-33018457)
chr6 (27-75)||(3543063-3543111)
chr6 (27-75)||(7531829-7531877)
chr6 (27-75)||(15083318-15083366)
chr6 (27-75)||(22579935-22579983)
chr6 (27-70)||(3542819-3542862)
chr6 (27-70)||(33479701-33479744)
chr6 (27-75)||(7532440-7532488)
chr6 (27-75)||(24126718-24126766)
chr6 (27-75)||(33018167-33018215)
[»] chr4 (35 HSPs)
chr4 (27-77)||(11417937-11417987)
chr4 (27-75)||(11417687-11417735)
chr4 (27-75)||(29651332-29651380)
chr4 (27-75)||(36865717-36865765)
chr4 (27-76)||(45235960-45236009)
chr4 (26-75)||(47198605-47198654)
chr4 (27-75)||(10424123-10424171)
chr4 (27-75)||(10425059-10425107)
chr4 (27-75)||(26611283-26611331)
chr4 (27-75)||(30808621-30808669)
chr4 (27-75)||(31836460-31836508)
chr4 (27-75)||(38694954-38695002)
chr4 (27-75)||(39523271-39523319)
chr4 (27-74)||(3847887-3847934)
chr4 (27-70)||(3848578-3848621)
chr4 (27-70)||(38143737-38143780)
chr4 (29-70)||(26610350-26610391)
chr4 (26-75)||(47199394-47199443)
chr4 (27-76)||(47376851-47376900)
chr4 (26-75)||(55159180-55159229)
chr4 (27-75)||(21166375-21166423)
chr4 (27-75)||(25371545-25371593)
chr4 (27-75)||(45230365-45230413)
chr4 (27-75)||(47377598-47377646)
chr4 (28-74)||(25370507-25370553)
chr4 (27-69)||(36864823-36864865)
chr4 (27-68)||(37275095-37275136)
chr4 (26-75)||(55160066-55160114)
chr4 (27-75)||(9939371-9939419)
chr4 (27-75)||(21165447-21165495)
chr4 (27-75)||(23425207-23425255)
chr4 (27-75)||(38694702-38694750)
chr4 (27-75)||(39429225-39429273)
chr4 (27-75)||(39522375-39522423)
chr4 (27-75)||(39652059-39652107)
[»] chr7 (18 HSPs)
chr7 (27-76)||(17145621-17145670)
chr7 (27-76)||(37469005-37469054)
chr7 (27-75)||(668179-668227)
chr7 (27-75)||(37468910-37468958)
chr7 (27-75)||(38778854-38778902)
chr7 (27-75)||(38779563-38779611)
chr7 (27-75)||(41194513-41194561)
chr7 (27-70)||(7677809-7677852)
chr7 (27-75)||(4261596-4261644)
chr7 (27-76)||(27599210-27599259)
chr7 (27-75)||(27600095-27600143)
chr7 (27-75)||(37864307-37864355)
chr7 (27-75)||(38071898-38071946)
chr7 (27-75)||(38072291-38072339)
chr7 (28-75)||(45887981-45888028)
chr7 (27-76)||(669103-669152)
chr7 (27-68)||(20890206-20890247)
chr7 (34-70)||(7677422-7677458)
[»] chr5 (19 HSPs)
chr5 (27-76)||(15184017-15184066)
chr5 (27-75)||(8204120-8204168)
chr5 (27-75)||(33002816-33002864)
chr5 (28-75)||(39950404-39950451)
chr5 (27-75)||(36626630-36626678)
chr5 (27-70)||(33001937-33001980)
chr5 (26-75)||(13654933-13654982)
chr5 (27-75)||(686417-686464)
chr5 (27-75)||(1970514-1970562)
chr5 (27-75)||(12190158-12190206)
chr5 (28-75)||(2319266-2319313)
chr5 (26-68)||(26316927-26316969)
chr5 (29-71)||(39167442-39167484)
chr5 (26-75)||(13655659-13655708)
chr5 (27-75)||(4607136-4607184)
chr5 (27-75)||(8040195-8040243)
chr5 (27-75)||(8040444-8040492)
chr5 (27-75)||(39149469-39149517)
chr5 (39-75)||(39950444-39950480)
[»] scaffold0311 (1 HSPs)
scaffold0311 (27-75)||(160-208)
[»] chr3 (18 HSPs)
chr3 (29-77)||(17226966-17227014)
chr3 (27-75)||(36750437-36750485)
chr3 (27-75)||(19132812-19132860)
chr3 (28-75)||(31556217-31556264)
chr3 (27-70)||(32490195-32490238)
chr3 (26-68)||(39901853-39901895)
chr3 (34-75)||(17227955-17227996)
chr3 (27-75)||(19132563-19132611)
chr3 (27-75)||(32489946-32489994)
chr3 (27-75)||(38923665-38923713)
chr3 (27-75)||(41756432-41756480)
chr3 (27-75)||(43768026-43768074)
chr3 (27-75)||(45242987-45243035)
chr3 (27-70)||(36750050-36750093)
chr3 (27-70)||(38922748-38922791)
chr3 (29-75)||(41755499-41755545)
chr3 (27-75)||(44687163-44687211)
chr3 (27-75)||(52492279-52492327)
[»] scaffold0041 (2 HSPs)
scaffold0041 (27-76)||(27220-27269)
scaffold0041 (27-75)||(27575-27623)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 76 - 344
Target Start/End: Complemental strand, 6862949 - 6862681
Alignment:
Q  76 gagaagttattggttagccttcaatgatatcacagatccacaacgtcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaatt 175  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6862949 gagaagttattagttagccttcaatgatatcacaaatccacaacgtcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaatt 6862850  T
Q  176 cacaactttaagcaattttctgaacgtaannnnnnnnnnnnncaggagggttttatttctagtgttggtagccttcaaggggtaaagcatgtggtcctct 275  Q
    ||||||||||| |||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6862849 cacaactttaaacaattttctgaacgtaagtttattcttttcaaggagggttttatttctagtgttggtagccttcaaggggtaaagcatttggtcctct 6862750  T
Q  276 tatcacaggtactctctttattcccttgtaccatcgcaaagacaacctttgttctgttttaataaagtt 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6862749 tatcacaggtactctctttattcccttgtaccatcgcaaagacaacctttgttctgttttaataaagtt 6862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 6873476 - 6873350
Alignment:
Q  218 caggagggttttatttctagtgttggtagccttcaaggggtaaagcatgtggtcctcttatcacaggtactctctttattcccttgtaccatcgcaaaga 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6873476 caggagggttttatttccagtgttggtagccttcaaggggtaaagcatgtggtcctcttatcacaggtactctctttattcccttgtaccatcgcaaaga 6873377  T
Q  318 caacctttgttctgttttaataaagtt 344  Q
    |||||||||||||||| ||||||||||    
T  6873376 caacctttgttctgttctaataaagtt 6873350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 6873582 - 6873504
Alignment:
Q  121 tcttttaatgaaatgacatgcaaagaatcatttgtgtcaaatgatatcacaaattcacaactttaagcaattttctgaac 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  6873582 tcttttaatgaaatgacatgcaaagaatcatttgtgtc-aatgatatcacaaattcacaacttcaaacaattttctgaac 6873504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 61503 - 61454
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  61503 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 1365878 - 1365829
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1365878 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 39255751 - 39255800
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  39255751 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgccacc 39255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 44751657 - 44751608
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  44751657 gactttcccatgatgggaaagaagtctcctttcccaagttaaatgccacc 44751608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 39254836 - 39254776
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccaccgagaagttatt 86  Q
    |||||||| |||||||||||||| ||||||||||||| |||||||||||| | ||||||||    
T  39254836 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacccaaaagttatt 39254776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 41859358 - 41859310
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 44752572 - 44752618
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  44752572 tttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 37639759 - 37639718
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  37639759 actttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 5034946 - 5034898
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  5034946 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 5034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 34992264 - 34992312
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  34992264 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 34992312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 5035276 - 5035325
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  5035276 actttcctatggtggaaaagaactctcctttcccaaattaaatggcaccg 5035325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 32536756 - 32536708
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||| ||||| || ||||||| ||||    
T  32536756 actttcccatggtgggaaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 42345442 - 42345394
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||| |||||| | |||||||||||    
T  42345442 actttcccatggtgggaaacaactctccattcccatgctaaatgccacc 42345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 43924537 - 43924489
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    |||||||||||||||||| ||||  |||||||||| |||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccaccg 43924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 62239 - 62288
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||| |||||||||||||| ||||||||| ||| ||||||| ||||    
T  62239 gactttcctatggtgggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 25876570 - 25876521
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||| || ||| ||||||||| ||||||| ||||    
T  25876570 gactttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacc 25876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 44098432 - 44098469
Alignment:
Q  38 gtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  44098432 gtgggaaagaactctcctttcccaaattaaatggcacc 44098469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7054138 - 7054090
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||||||||||| |||||||| |||||| | |||||||||||    
T  7054138 acttttccatggtgggaaacaactctccattcccatgctaaatgccacc 7054090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 43433859 - 43433811
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||  | || ||||||||| |||||||||||||    
T  43433859 actttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 5276514 - 5276465
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5276514 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 5276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 21471065 - 21471017
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 21471954 - 21472002
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 14573309 - 14573260
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  14573309 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcaccg 14573260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4479702 - 4479750
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  4479702 actttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 13134366 - 13134318
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  13134366 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 37548046 - 37547998
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  37548046 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 33433159 - 33433201
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  33433159 gactttcccatggtgggaaagaactctcctttctcaaattaaa 33433201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14574007 - 14574047
Alignment:
Q  35 atggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  14574007 atggtgggaaagaactctcctttcccaaattaaatggcacc 14574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 43789477 - 43789430
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  43789477 ctttcccatggtgggaaagaagtatccattcccaggttaaatgccacc 43789430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 41042588 - 41042542
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  41042588 tttcccatggtgggaaagaagcctcctttctcaaattaaatgccacc 41042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 45139738 - 45139692
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||| ||| |||||| ||||||||||||| ||||||||||||    
T  45139738 tttcccatgatggaaaagaagtctcctttcccaaattaaatgccacc 45139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 1164788 - 1164824
Alignment:
Q  39 tgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  1164788 tgggaaagaactctcctttcccaaattaaatggcacc 1164824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 20991335 - 20991287
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| ||| |||||||| |||||| | |||||||||||    
T  20991335 actttcccatggtggaaaacaactctccattcccatgctaaatgccacc 20991287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 32471987 - 32471939
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||| |  | ||||||||| |||||||||||||    
T  32471987 actttcccatggtgggaaaggatccacctttcccatgttaaatgccacc 32471939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 37546564 - 37546612
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| ||||||| ||||| |||||||||  ||||||||||||    
T  37546564 actttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38834435 - 38834387
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||| ||||||||||| || |||||||||||| ||||||| ||||    
T  38834435 actttcccgtggtgggaaagtaccctcctttcccaaattaaatggcacc 38834387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 38834636 - 38834684
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||| ||| ||||| |||||||||||||||| ||||||| ||||    
T  38834636 actttcccacggtaggaaaaaactctcctttcccaaattaaatggcacc 38834684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 35616774 - 35616823
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35616774 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 35616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 16270255 - 16270207
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 23440865 - 23440913
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 51974485 - 51974437
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 51987875 - 51987827
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 35615812 - 35615767
Alignment:
Q  30 ttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  35615812 ttcccatggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 37874113 - 37874064
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  37874113 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 193898 - 193850
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 9948887 - 9948935
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  9948887 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 43737978 - 43738026
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  43737978 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 43738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 48972445 - 48972493
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  48972445 acttttccatggtgggaaagaactctcctttcccaaattaaatggcacc 48972493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 51988464 - 51988512
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  51988464 actttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 48869815 - 48869769
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  48869815 tttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacc 48869769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 37822521 - 37822472
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| |||||||||||||||||| |||||||||| |||||||| ||||    
T  37822521 gacttttccatggtgggaaagaactttcctttcccaggttaaatgacacc 37822472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 48870752 - 48870801
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||| || |||| ||||||||||||||| |||||    
T  48870752 gactttcccatggtgggaaaaaagtctcatttcccaagttaaattccacc 48870801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 8560887 - 8560839
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||| ||||    
T  8560887 actttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 43737777 - 43737729
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||| ||||    
T  43737777 actttcccatggtgggaaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 48971753 - 48971705
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| ||||    
T  48971753 actttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 1012595 - 1012554
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    ||||||||||||||||||| || ||||||||||||| |||||    
T  1012595 actttcccatggtgggaaaaaaatctcctttcccaaattaaa 1012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 23440665 - 23440616
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||| |||| || |||||||||||||||||||||| ||||||| |||||    
T  23440665 acttttccatagttggaaagaactctcctttcccaaattaaatggcaccg 23440616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 30780984 - 30781025
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  30780984 actttcccatgatgggaaacaactctcctttcccatgttaaa 30781025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 9948043 - 9947995
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||| ||||    
T  9948043 acttttccatggtgggaaagaacttttctttcccaaattaaatggcacc 9947995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 11031479 - 11031431
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||  | || ||||||||| |||||||||||||    
T  11031479 actttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 11032219 - 11032267
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||  | || ||||||||| |||||||||||||    
T  11032219 actttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 16271148 - 16271196
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| || |||||||||||||||||| || ||||||| ||||    
T  16271148 actttcccatgatgagaaagaactctcctttcctaaattaaatggcacc 16271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 29334262 - 29334214
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||| ||| |||||| | |||||||||||    
T  29334262 actttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38930360 - 38930312
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||| ||||    
T  38930360 actttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc 38930312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 43316405 - 43316357
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||| ||| |||||| | |||||||||||    
T  43316405 actttcccatggtgggaaacaactatccattcccatgctaaatgccacc 43316357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 50827091 - 50827138
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  50827091 actttcccatggtgggaaa-aactctcctttctcaaattaaatggcacc 50827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 51975227 - 51975275
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||| |||  |||||||||||||||||||| ||||||| ||||    
T  51975227 actttcccatagtgaaaaagaactctcctttcccaaattaaatggcacc 51975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 9574570 - 9574622
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccaccgag 78  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  9574570 gactttcctatggtgggaaagaagtctcctttcccaagttaaatgccaccgag 9574622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7193386 - 7193338
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 33480628 - 33480676
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 22582479 - 22582522
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  22582479 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 22587310 - 22587353
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  22587310 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 24126020 - 24125971
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccaccg 24125971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 33018416 - 33018457
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 3543063 - 3543111
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7531877 - 7531829
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  7531877 actttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 22579983 - 22579935
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  22579983 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 3542862 - 3542819
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  3542862 actttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 33479744 - 33479701
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  33479744 actttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 7532440 - 7532488
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||  |||||| ||||||||||||| ||||||||||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacc 7532488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 24126718 - 24126766
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| ||||||| ||||| |||||||||| ||||||||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 33018215 - 33018167
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  33018215 actttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 11417937 - 11417987
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccga 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  11417937 actttcccatggtgggaaagaactctcctttcccaaattaaatgacaccga 11417987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 11417735 - 11417687
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 29651332 - 29651380
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 36865717 - 36865765
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  36865717 actttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 45235960 - 45236009
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  45235960 actttcccatggtgggaaagaactctccttttccaaattaaatggcaccg 45236009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 47198654 - 47198605
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  47198654 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacc 47198605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 10424171 - 10424123
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  10424171 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 10425059 - 10425107
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  10425059 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 10425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 26611283 - 26611331
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  26611283 actttcccatggtgggaaaaaactctcctttcccaaattaaatgacacc 26611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 30808669 - 30808621
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  30808669 actttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 31836460 - 31836508
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  31836460 actttcccatggtgggaaagaactctcctttctcaaattaaatggcacc 31836508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39523271 - 39523319
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  39523271 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 3847934 - 3847887
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccac 74  Q
    ||||||||||||||||||| || ||||||||||||| |||||||||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatgccac 3847887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 3848578 - 3848621
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  3848578 actttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 38143737 - 38143780
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  38143737 actttcccatggtgggaaagaactctcatttcccaaattaaatg 38143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 26610391 - 26610350
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  26610391 tttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 47199394 - 47199443
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||| |||||||||||||| |||| |||||||| ||||||||||||    
T  47199394 gactttcctatggtgggaaagaagtctcttttcccaaattaaatgccacc 47199443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 47376900 - 47376851
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||| ||||||| ||||| |||||||||| |||||||||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccaccg 47376851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 55159229 - 55159180
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| |||||    
T  55159229 gactttcccatggtaggaaagaagtctcctttcccaaattaaataccacc 55159180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 21166375 - 21166423
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||| ||||    
T  21166375 actttcccatgatgggaaagaactctcctttctcaaattaaatggcacc 21166423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 25371545 - 25371593
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||| ||||    
T  25371545 actttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 45230413 - 45230365
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||| |||||| | ||||||| ||||    
T  45230413 actttcccatggtgggaaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 47377598 - 47377646
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||| ||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaaatggcacc 47377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 25370553 - 25370507
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccac 74  Q
    |||||||||||||||||| ||||  |||||||||| |||||||||||    
T  25370553 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccac 25370507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 36864865 - 36864823
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaat 69  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||    
T  36864865 actttctcatggtgagaaagaactctcctttcccaaattaaat 36864823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 37275136 - 37275095
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    |||||| ||||||||||||||| ||||||||||||| |||||    
T  37275136 actttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 55160066 - 55160114
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||| || ||||||||||||| ||||||||||||    
T  55160066 gactttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacc 55160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 9939371 - 9939419
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||||||||||||||||| |||||| ||| ||||||| ||||    
T  9939371 acttttccatggtgggaaagaactcccctttctcaaattaaatggcacc 9939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 21165495 - 21165447
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| ||||||||||||||||| | ||||||||| ||||||| ||||    
T  21165495 actttctcatggtgggaaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 23425207 - 23425255
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||| ||||||   |||||||||||    
T  23425207 actttcccatggtgggaaacaactctccattcccatactaaatgccacc 23425255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38694750 - 38694702
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||| ||||||||||||||||||| |||| ||||||| ||||    
T  38694750 acttttccatgctgggaaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 39429273 - 39429225
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||| ||||| |||||||| |||||| | |||||||||||    
T  39429273 actttcccatggtaggaaacaactctccattcccatgctaaatgccacc 39429225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 39522423 - 39522375
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||| ||||    
T  39522423 actttcccatggtgaaaaagaactatcctttcccaaattaaatgacacc 39522375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39652059 - 39652107
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||| |||| |||||||| |||||| | |||||||||||    
T  39652059 actttcccatggtgagaaacaactctccattcccatgctaaatgccacc 39652107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 17145670 - 17145621
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 17145621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 37469005 - 37469054
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 37469054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 668227 - 668179
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 37468958 - 37468910
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38778902 - 38778854
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 38779563 - 38779611
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 41194561 - 41194513
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 7677809 - 7677852
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  7677809 actttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4261596 - 4261644
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  4261596 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 4261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 27599259 - 27599210
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccattttaaatgccaccg 27599210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 27600095 - 27600143
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| ||||| |||||||||  ||||||||||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 37864307 - 37864355
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  37864307 actttcccatggtgggaaagaactcttatttcccaaattaaatggcacc 37864355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38071946 - 38071898
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| ||||    
T  38071946 actttcccatgatgggaaagaactctcctttcctaaattaaatggcacc 38071898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 38072291 - 38072339
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||| ||||    
T  38072291 actttcccatggtggaaaagaactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 45887981 - 45888028
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||| ||||  |||||||||| ||||||||||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacc 45888028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 669103 - 669152
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||| ||||||||||| ||||||| |||||||| ||||||| |||||    
T  669103 actttcctatggtgggaaaaaactctcatttcccaaattaaatggcaccg 669152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 20890247 - 20890206
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  20890247 actttcccatggtgggaaaaaactgtcctttcccaaattaaa 20890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 7677458 - 7677422
Alignment:
Q  34 catggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  7677458 catggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 15184017 - 15184066
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 15184066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 8204168 - 8204120
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 33002816 - 33002864
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  33002816 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 33002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 36626630 - 36626678
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  36626630 actttcccatggtgggaaagaactctcatttcccaaattaaatggcacc 36626678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 33001980 - 33001937
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  33001980 acttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 13654982 - 13654933
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||| ||||    
T  13654982 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacc 13654933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 686464 - 686417
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  686464 actttcccatggtgggaaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 1970514 - 1970562
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||| |||||| | |||||||||||    
T  1970514 actttcccatggtgggaaacaactctccattcccatgctaaatgccacc 1970562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 12190158 - 12190206
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||| ||||    
T  12190158 actttcccatggtgggaaaaaactctcttttcccaaattaaatggcacc 12190206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 2319313 - 2319266
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||| ||||  |||||||||| ||||||||||||    
T  2319313 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacc 2319266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 26316969 - 26316927
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  26316969 gactttcccatggtgggaaagaagtttcctttcccaggttaaa 26316927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 39167442 - 39167484
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgc 71  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 13655659 - 13655708
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||  |||||||||| |||| |||||||| ||||||||||||    
T  13655659 gactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 4607136 - 4607184
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||| |||||||||||| |||||||| |||||| | |||||||||||    
T  4607136 actttctcatggtgggaaacaactctccattcccatgctaaatgccacc 4607184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 8040243 - 8040195
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||| | |||||||||||| ||||||||||| ||||||| ||||    
T  8040243 actttcccacgatgggaaagaactgtcctttcccaaattaaatggcacc 8040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 8040444 - 8040492
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||| |||||||||||| | ||||||||||| ||||||| ||||    
T  8040444 actttcccacggtgggaaagaaatttcctttcccaaattaaatggcacc 8040492  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39149469 - 39149517
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||| | || ||||||||| || ||||||||||    
T  39149469 actttcccatggtgggaaaggattcacctttcccatgtgaaatgccacc 39149517  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 39950444 - 39950480
Alignment:
Q  39 tgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  39950444 tgggaaagaactctcctttcccaaattaaatggcacc 39950480  T

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Target: scaffold0311 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 160 - 208
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 208  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 17227014 - 17226966
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccaccga 77  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccaccga 17226966  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 36750437 - 36750485
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 36750485  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 19132812 - 19132860
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  28 ctttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 32490195 - 32490238
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  32490195 acttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 39901895 - 39901853
Alignment:
Q  26 gactttcccatggtgggaaagaactctcctttcccaagttaaa 68  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  39901895 gactttcccatggtgggaaagaactctcatttcccaggttaaa 39901853  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 17227955 - 17227996
Alignment:
Q  34 catggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  17227955 catggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 19132611 - 19132563
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||||||||| || |||||||||||||||||||||| ||||||| ||||    
T  19132611 actttcccatagtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 32489994 - 32489946
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| ||||    
T  32489994 actttcccatggtggaaaagaattctcctttcccaaattaaatggcacc 32489946  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 38923665 - 38923713
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||| ||||    
T  38923665 acttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 41756432 - 41756480
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| ||||    
T  41756432 actttcccatgatgggaaagaactctcctttcctaacttaaatgacacc 41756480  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 43768074 - 43768026
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| |||||||| |||||| | |||||||||||    
T  43768074 actttcccatggtgggaaacaactctccattcccatgctaaatgccacc 43768026  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 45242987 - 45243035
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||| ||||    
T  45242987 actttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 36750093 - 36750050
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||    
T  36750093 acttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 38922791 - 38922748
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatg 70  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||    
T  38922791 actttcccatggtaggaaataactctcctttcccaaattaaatg 38922748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 41755545 - 41755499
Alignment:
Q  29 tttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    |||| |||||||||||| |||||||||||||||| ||||||| ||||    
T  41755545 tttctcatggtgggaaaaaactctcctttcccaaattaaatgacacc 41755499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 44687163 - 44687211
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||||||| |||||| ||||||||||||| ||||||| ||||    
T  44687163 acttttccatggtggaaaagaattctcctttcccaaattaaatggcacc 44687211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 52492279 - 52492327
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||| ||||||||| ||||||||||| |||||||| ||||||| ||||    
T  52492279 acttttccatggtggaaaagaactctcatttcccaaattaaatgacacc 52492327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 27269 - 27220
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccaccg 76  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  27269 actttcccatgatgggaaagaactctcctttcccaaattaaatggcaccg 27220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 27575 - 27623
Alignment:
Q  27 actttcccatggtgggaaagaactctcctttcccaagttaaatgccacc 75  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||| ||||    
T  27575 actttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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