View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_32 (Length: 317)
Name: NF2898_low_32
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 28595832 - 28595675
Alignment:
| Q |
1 |
tatctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaac-ttttactag |
99 |
Q |
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| T |
28595832 |
tatctttgagagtaagacctttattggtaaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactag |
28595733 |
T |
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| Q |
100 |
caatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
157 |
Q |
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| T |
28595732 |
caatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
28595675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 32494052 - 32493895
Alignment:
| Q |
1 |
tatctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagc |
100 |
Q |
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| T |
32494052 |
tatctttgagagtaagacctttattggtaaaatgggctataagagttgttagatcatccgtaaattttggaaggtctgaattggcctgacttttgctagc |
32493953 |
T |
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| Q |
101 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatc |
158 |
Q |
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| T |
32493952 |
aacggtggagtctcttcttccgagttttaccgtccatgacggaccacccacctgcatc |
32493895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 28592181 - 28592311
Alignment:
| Q |
28 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
127 |
Q |
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| T |
28592181 |
taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt |
28592280 |
T |
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| Q |
128 |
taccgtccatgatggaccacccacctgcatc |
158 |
Q |
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| T |
28592281 |
taccgtccatgatggaccacccacctgcatc |
28592311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 28595606 - 28595534
Alignment:
| Q |
225 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatac |
297 |
Q |
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| T |
28595606 |
aacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggacatac |
28595534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 28587083 - 28587203
Alignment:
| Q |
28 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
127 |
Q |
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| T |
28587083 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagttt |
28587182 |
T |
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| Q |
128 |
taccgtccatgatggaccacc |
148 |
Q |
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||| |||||||| || ||||| |
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| T |
28587183 |
tactgtccatgacgggccacc |
28587203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 32493818 - 32493746
Alignment:
| Q |
225 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatac |
297 |
Q |
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| T |
32493818 |
aacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccagggcatac |
32493746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 28592386 - 28592455
Alignment:
| Q |
225 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggaca |
294 |
Q |
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|||||||| |||||||||||||||||||||| | |||| ||||| || |||||||||||||| ||||| |
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| T |
28592386 |
aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggaca |
28592455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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