View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2898_low_33 (Length: 316)

Name: NF2898_low_33
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2898_low_33
NF2898_low_33
[»] chr4 (23 HSPs)
chr4 (20-299)||(52204416-52204697)
chr4 (17-118)||(13634044-13634145)
chr4 (18-118)||(26633751-26633851)
chr4 (18-103)||(44596608-44596693)
chr4 (19-107)||(12199774-12199862)
chr4 (18-118)||(22611112-22611212)
chr4 (23-118)||(19853597-19853692)
chr4 (18-104)||(4142835-4142921)
chr4 (57-118)||(2520706-2520767)
chr4 (52-117)||(10259010-10259074)
chr4 (17-117)||(51888293-51888396)
chr4 (18-118)||(21686322-21686421)
chr4 (18-118)||(32766443-32766543)
chr4 (17-109)||(33920989-33921081)
chr4 (18-109)||(17949404-17949495)
chr4 (18-109)||(17953256-17953347)
chr4 (47-109)||(47158165-47158227)
chr4 (57-118)||(5119268-5119329)
chr4 (18-109)||(22300782-22300875)
chr4 (18-118)||(35348234-35348336)
chr4 (18-66)||(36194683-36194731)
chr4 (57-105)||(45418468-45418516)
chr4 (20-72)||(56156724-56156776)
[»] chr6 (11 HSPs)
chr6 (20-109)||(34018479-34018568)
chr6 (18-118)||(33053248-33053348)
chr6 (19-118)||(3913655-3913754)
chr6 (20-109)||(127589-127678)
chr6 (18-118)||(606114-606214)
chr6 (18-109)||(32327297-32327388)
chr6 (22-74)||(31852272-31852324)
chr6 (18-72)||(32059865-32059919)
chr6 (57-118)||(68120-68181)
chr6 (20-109)||(23128537-23128626)
chr6 (20-73)||(25092430-25092483)
[»] chr2 (15 HSPs)
chr2 (17-118)||(4904225-4904326)
chr2 (20-118)||(43397202-43397301)
chr2 (18-106)||(7448178-7448266)
chr2 (18-109)||(4264400-4264491)
chr2 (18-109)||(38445094-38445185)
chr2 (21-118)||(4041678-4041775)
chr2 (18-80)||(7677954-7678016)
chr2 (19-109)||(39310934-39311024)
chr2 (57-118)||(29279690-29279751)
chr2 (18-118)||(4099022-4099122)
chr2 (57-109)||(11985350-11985402)
chr2 (18-109)||(31210688-31210779)
chr2 (19-95)||(6358958-6359035)
chr2 (18-118)||(9169339-9169438)
chr2 (18-118)||(19062433-19062533)
[»] chr7 (17 HSPs)
chr7 (18-118)||(47590222-47590322)
chr7 (19-109)||(48316893-48316983)
chr7 (18-118)||(34899687-34899787)
chr7 (17-118)||(25287265-25287366)
chr7 (18-118)||(40993093-40993193)
chr7 (18-80)||(9450217-9450279)
chr7 (18-118)||(28476131-28476231)
chr7 (18-118)||(37837538-37837639)
chr7 (18-79)||(39228965-39229026)
chr7 (18-118)||(42978520-42978621)
chr7 (18-102)||(19296797-19296881)
chr7 (18-118)||(30756899-30756999)
chr7 (47-109)||(26610854-26610916)
chr7 (18-118)||(24350924-24351024)
chr7 (18-118)||(12141388-12141487)
chr7 (19-118)||(19404838-19404935)
chr7 (20-109)||(45349881-45349974)
[»] chr8 (6 HSPs)
chr8 (18-118)||(7883319-7883418)
chr8 (17-118)||(18890783-18890884)
chr8 (18-72)||(39657404-39657458)
chr8 (18-78)||(10377640-10377700)
chr8 (52-108)||(44091860-44091916)
chr8 (18-109)||(45445889-45445981)
[»] chr5 (11 HSPs)
chr5 (21-118)||(11977018-11977117)
chr5 (18-118)||(13007137-13007237)
chr5 (18-118)||(6216807-6216907)
chr5 (18-118)||(9113805-9113905)
chr5 (18-118)||(6012218-6012318)
chr5 (18-118)||(11073980-11074080)
chr5 (18-118)||(26825339-26825438)
chr5 (16-118)||(14726539-14726642)
chr5 (18-109)||(38597714-38597805)
chr5 (18-118)||(2979393-2979493)
chr5 (59-118)||(8096618-8096678)
[»] chr3 (25 HSPs)
chr3 (18-109)||(18010936-18011028)
chr3 (18-118)||(43488670-43488770)
chr3 (18-118)||(47896060-47896160)
chr3 (18-118)||(36461511-36461611)
chr3 (18-118)||(6954776-6954876)
chr3 (18-118)||(10108145-10108244)
chr3 (18-118)||(10232979-10233078)
chr3 (18-109)||(40556629-40556720)
chr3 (19-109)||(12149865-12149955)
chr3 (18-118)||(1649328-1649425)
chr3 (17-109)||(9319974-9320066)
chr3 (18-118)||(9998376-9998475)
chr3 (18-118)||(10229385-10229484)
chr3 (18-109)||(27706313-27706404)
chr3 (23-70)||(21585994-21586041)
chr3 (18-109)||(38860200-38860290)
chr3 (60-118)||(7449024-7449082)
chr3 (60-118)||(7457166-7457224)
chr3 (18-72)||(51487057-51487111)
chr3 (16-109)||(53508138-53508232)
chr3 (18-106)||(19339095-19339184)
chr3 (21-118)||(21533892-21533989)
chr3 (18-118)||(21431533-21431633)
chr3 (18-118)||(40487233-40487333)
chr3 (18-118)||(52923197-52923297)
[»] chr1 (9 HSPs)
chr1 (17-118)||(1742192-1742294)
chr1 (18-118)||(8211990-8212090)
chr1 (23-109)||(34479412-34479498)
chr1 (19-118)||(7337744-7337843)
chr1 (19-109)||(35462118-35462208)
chr1 (57-118)||(21947737-21947798)
chr1 (18-118)||(35484471-35484571)
chr1 (57-118)||(23291761-23291823)
chr1 (18-118)||(16161743-16161843)
[»] scaffold0445 (1 HSPs)
scaffold0445 (20-109)||(1261-1351)
[»] scaffold0634 (1 HSPs)
scaffold0634 (19-109)||(8430-8520)
[»] scaffold0127 (1 HSPs)
scaffold0127 (18-118)||(15400-15500)
[»] scaffold0136 (1 HSPs)
scaffold0136 (18-109)||(10122-10212)
[»] scaffold0026 (1 HSPs)
scaffold0026 (18-109)||(71944-72035)
[»] scaffold0603 (1 HSPs)
scaffold0603 (20-109)||(7633-7723)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-118)||(32827-32928)
[»] scaffold0618 (1 HSPs)
scaffold0618 (52-108)||(7994-8050)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 52204416 - 52204697
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaat--ttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||| ||||||| |||| | ||||   ||||||||||||||||||||||||||||||    
T  52204416 cacaagacgacgaacaactcaacgtcacactcaaatgacgaaatcacgaaaaactaaaaaaaaaaaaaaattgatatacgtgaaaaccacttgcttagat 52204515  T
Q  118 tnnnnnnnnnnnnnnnnnncataaagtaattctatgtcaaaaattatctaaaacaatccttcttaacaagtgagtgaggaaactcatagagaccgtaagt 217  Q
    |                  ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |||    
T  52204516 taaaaaaagagggaaaaaacataaagtaattctatgtcaaaaattatctaaaacgatccttcttaacaagtaagtgaggaaactcatagagacagtgagt 52204615  T
Q  218 ttctctcgctgcaaaaactaagcacattcgtggctgttatattttattgcatattttatttggttatatgaacgtatatttt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52204616 ttctctcgctgcaaaaactaagcacattcgtggctgttatattttattgcatattttatttggttatatgaaggtatatttt 52204697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 13634145 - 13634044
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    ||||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||  |||||    
T  13634145 tcgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttaga 13634046  T
Q  117 tt 118  Q
    ||    
T  13634045 tt 13634044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 26633751 - 26633851
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||  ||||||    
T  26633751 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagat 26633850  T
Q  118 t 118  Q
    |    
T  26633851 t 26633851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 44596693 - 44596608
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaa 103  Q
    |||||||||||||||||||| |||||||||||| |||  | |||||||||||| || ||||| | |||| ||| |||| |||||||    
T  44596693 cgcacaagacgacgaacaatacaacgtcacacttagacgaggaaatcacaaaatacacaaaacaaaaaacttgttatatgtgaaaa 44596608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 12199774 - 12199862
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccac 107  Q
    |||||| |||| ||||||  ||||| ||||||||||  ||||||||||||||||| ||||| |||||| ||| |||  |||||||||||    
T  12199774 gcacaaaacgatgaacaacacaacgccacactcagacgacgaaatcacaaaaaacacaaaatagaaaacttgctatgtgtgaaaaccac 12199862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 22611212 - 22611112
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||   ||| |||||| | |||||||||||||  ||||||    
T  22611212 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggataaacttgatagatgtgaaaaccacttatttagat 22611113  T
Q  118 t 118  Q
    |    
T  22611112 t 22611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 19853597 - 19853692
Alignment:
Q  23 aagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||  ||||| | |||| |||  |||||||||||||||||  |||||| |||| |||||| | |||||||||||||  |||||||    
T  19853597 aagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacaaaaaagaaaaaacttgatagatgtgaaaaccacttatttagatt 19853692  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 4142835 - 4142921
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaac 104  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | ||||||||    
T  4142835 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaac 4142921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 2520767 - 2520706
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||  |||||||    
T  2520767 acgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagatt 2520706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 10259010 - 10259074
Alignment:
Q  52 agataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||| |||||||||||||| ||||||||| ||||| |||||||| |||||||||| ||| ||||||    
T  10259010 agatgacgaaatcacaaaa-actcaaaagggaaaacttgatatatgtgaaaaccatttgtttagat 10259074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 51888293 - 51888396
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac---aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgctt 113  Q
    ||||| ||||||| ||||||  ||||| | |||||||| |||||||||||   ||||||| ||||||| || | |||||||| ||||||| |||||| ||    
T  51888293 tcgcataagacgatgaacaacacaacgccgcactcagacaacgaaatcacgaaaaaaaacacaaaagaaaacacttgatatatgtgaaaatcacttgttt 51888392  T
Q  114 agat 117  Q
    ||||    
T  51888393 agat 51888396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 21686322 - 21686421
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  || || | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  21686322 cgcacaagacgacgaacaacaca-cgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 21686420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 32766543 - 32766443
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||  | |||| |||  |||||||||||||||||  |||||  |||| |||||| | ||||||| ||||| |||||||    
T  32766543 cgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaaaaccaaaaaggaaaaacttgatagatgtgaaaaacacttacttagat 32766444  T
Q  118 t 118  Q
    |    
T  32766443 t 32766443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 33921081 - 33920989
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||| |||||| |||||||  ||||| | |||| |||  ||||||||||||||| | ||||||| |||| |||||||| ||||||| |||||    
T  33921081 tcgcataagacggcgaacaacacaacgccgcacttagacgacgaaatcacaaaaagcacaaaagaaaaaacttgatatatgtgaaaatcactt 33920989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 17949404 - 17949495
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||| ||||| |||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||||  |||||||||||||    
T  17949404 cgcacaacacgacaaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatgtgtgaaaaccactt 17949495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 17953256 - 17953347
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||| ||||| |||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||||  |||||||||||||    
T  17953256 cgcacaacacgacaaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatgtgtgaaaaccactt 17953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 47158227 - 47158165
Alignment:
Q  47 cactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||| |||| ||||||||||||||||| ||||||| |||| |||||||| ||| ||| |||||    
T  47158227 cacttagatgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtggaaatcactt 47158165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 5119329 - 5119268
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||| ||||| ||||||  |||| |||||||| |||||||||||||  |||||||    
T  5119329 acgaaatcacacaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagatt 5119268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 22300875 - 22300782
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaact-caaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  ||||||| ||| ||||  |||||||||| |||||| | ||||||| |  | |||||||||||||||| |||||    
T  22300875 cgcacaagacgacgaacaacacaacgtcgcacacagacgacgaaatcacgaaaaaagtacaaaagaaagcacttgatatacgtgaaaatcactt 22300782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 35348336 - 35348234
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaa---aaaactcaaaagagaaaatttgatatacgtgaaaaccacttgctta 114  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||   ||||| ||||||| |||| |||||||  |||||||||||||  |||    
T  35348336 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaaaaacacaaaaga-aaaacttgatatttgtgaaaaccacttattta 35348238  T
Q  115 gatt 118  Q
    ||||    
T  35348237 gatt 35348234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 36194731 - 36194683
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac 66  Q
    |||||||||||||||||||  ||||||| |||| ||| |||||||||||    
T  36194731 cgcacaagacgacgaacaacacaacgtcgcactaagacaacgaaatcac 36194683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 45418516 - 45418468
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaacc 105  Q
    ||||||||||||||||| ||||||  |||| |||||||| |||||||||    
T  45418516 acgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaacc 45418468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 56156724 - 56156776
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa 72  Q
    |||||||||||||||||  ||||| |||||| |||  ||||||||||||||||    
T  56156724 cacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaa 56156776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 34018568 - 34018479
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||  ||||| |||||| |||  ||||||||||||||||| ||||||| |||| |||||||| |||||||||||||    
T  34018568 cacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccactt 34018479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 33053248 - 33053348
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  33053248 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 33053347  T
Q  118 t 118  Q
    |    
T  33053348 t 33053348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 3913655 - 3913754
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||||  ||||| | |||| |||  ||||||| ||||||||| ||||||| |||| |||||| | |||||||||||||  |||||||    
T  3913655 gcacaagacgacgaacaacacaacgccgcacttagacgacgaaataacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagatt 3913754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 127678 - 127589
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||  |||||   |||| |||  ||||||||||||||||| ||||||  |||| |||||||| |||||||||||||    
T  127678 cacaagacgacgaacaacacaacgctgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaaccactt 127589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 606214 - 606114
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||| |||||||||  ||||| | |||| |||  ||||||||||||| ||| ||||||  ||||||||||| | |||||||||||||  ||||||    
T  606214 cgcacaagatgacgaacaacacaacgccgcacttagacgacgaaatcacaaataacacaaaaggaaaaatttgatagatgtgaaaaccacttatttagat 606115  T
Q  118 t 118  Q
    |    
T  606114 t 606114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 32327297 - 32327388
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  ||||| | |||| |||  | ||||||||||||||| ||||||  |||| |||||| | |||||||||||||    
T  32327297 cgcacaagacgacgaacaacacaacgccgcacttagactatgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccactt 32327388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 31852272 - 31852324
Alignment:
Q  22 caagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaact 74  Q
    |||||||||||||||  ||||||| ||||||||  ||||||||||||||||||    
T  31852272 caagacgacgaacaacacaacgtcgcactcagacgacgaaatcacaaaaaact 31852324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 32059919 - 32059865
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa 72  Q
    |||||||||||||||||||  |||||||||||| |||  | ||||||||||||||    
T  32059919 cgcacaagacgacgaacaacacaacgtcacacttagacgaagaaatcacaaaaaa 32059865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 68120 - 68181
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  |||||||    
T  68120 acgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagatt 68181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 23128626 - 23128537
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||  ||||| | |||| |||  | ||||||||||||||  ||||||  |||| |||||| | |||||||||||||    
T  23128626 cacaagacgacgaacaacacaacgccgcacttagacgatgaaatcacaaaaaatacaaaaggaaaaacttgatagatgtgaaaaccactt 23128537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 25092483 - 25092430
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaac 73  Q
    |||||||||  ||||||  ||||| ||||||||||| |||||||||||||||||    
T  25092483 cacaagacgctgaacaacacaacgccacactcagatgacgaaatcacaaaaaac 25092430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4904225 - 4904326
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    ||||||||||||||||||||  ||||| ||||||  ||  ||||||||||||||||| ||||||| |||| |||||||| |||||||||||||  |||||    
T  4904225 tcgcacaagacgacgaacaacacaacgccacactttgacgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttaga 4904324  T
Q  117 tt 118  Q
    ||    
T  4904325 tt 4904326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 43397202 - 43397301
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    |||||||||||||||||  ||||| |||||| |||  |||||||||| ||||||| ||||||| |||| |||||||| |||||||||||||  |||||||    
T  43397202 cacaagacgacgaacaacacaacgccacacttagacgacgaaatcacgaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagatt 43397301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 7448266 - 7448178
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaacca 106  Q
    |||||||||||||||||||  ||||| | |||| ||| |||||||||||||||||| ||||||  |||| |||||| | ||||||||||    
T  7448266 cgcacaagacgacgaacaacacaacgccgcacttagacaacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaacca 7448178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 4264491 - 4264400
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  |||| || ||||| ||  ||||||||||||||||| |||||   |||| |||||||| |||||||||||||    
T  4264491 cgcacaagacgacgaacaacgcaacatctcactccgacgacgaaatcacaaaaaacacaaaatgaaaaacttgatatatgtgaaaaccactt 4264400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 38445185 - 38445094
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  |||||   |||| |||  ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||    
T  38445185 cgcacaagacgacgaacaacacaacgctgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccactt 38445094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 4041678 - 4041775
Alignment:
Q  21 acaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  |||||||    
T  4041678 acaagacgacgaacaacacaacgacgcacttagaagacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagatt 4041775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 7677954 - 7678016
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaag 80  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||||||||||    
T  7677954 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaactcaaaag 7678016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 39310934 - 39311024
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||| ||||||  ||||  |||||| |||| | ||||||||||||||| ||||||  |||| |||||| | |||||||||||||    
T  39310934 gcacaagacgaagaacaacacaacaccacacttagatgatgaaatcacaaaaaacccaaaaggaaaaacttgataaatgtgaaaaccactt 39311024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 29279690 - 29279751
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||| ||||||  |||| |||||||| |||||||||||||  |||||||    
T  29279690 acgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagatt 29279751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 4099122 - 4099022
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||| ||||||||  ||||| | |||| |||  ||||||| ||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  4099122 cgcacaagacaacgaacaacacaacgccgcacttagacgacgaaattacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 4099023  T
Q  118 t 118  Q
    |    
T  4099022 t 4099022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 11985350 - 11985402
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||| || ||||||| |||| |||||||| |||||||||||||    
T  11985350 acgaaatcacaaaacacacaaaagaaaaaacttgatatatgtgaaaaccactt 11985402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 31210688 - 31210779
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||| || |||||  ||||| | |||| |||  ||||||||| ||||||| ||||||| |||| |||||| | |||||||||||||    
T  31210688 cgcacaagacaacaaacaacacaacgccgcacttagacgacgaaatcataaaaaacacaaaagaaaaaacttgatagatgtgaaaaccactt 31210779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6358958 - 6359035
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatata 95  Q
    ||||||||||||||||||  ||||| ||||||||||  || ||||||| ||||||| |||| || |||| ||||||||    
T  6358958 gcacaagacgacgaacaacacaacgacacactcagacgacaaaatcacgaaaaaacacaaaggaaaaaacttgatata 6359035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 9169339 - 9169438
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||| ||||||||  ||||| | |||| |||  |||||||||| |||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  9169339 cgcacaagacaacgaacaacacaacgccgcacttagacgacgaaatcac-aaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 9169437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 19062433 - 19062533
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  |||||   |||| |||  |||| ||||||||||||  |||||  |||| |||||| | |||||||||||||  ||||||    
T  19062433 cgcacaagacgacgaacaacacaacgctgcacttagacgacgatatcacaaaaaacataaaaggaaaaacttgatagatgtgaaaaccacttatttagat 19062532  T
Q  118 t 118  Q
    |    
T  19062533 t 19062533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 47590322 - 47590222
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| ||| |||||||||||||||||| ||||||  |||| |||||||| |||||||||||||  ||||||    
T  47590322 cgcacaagacgacgaacaacacaacgccgcacttagacaacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagat 47590223  T
Q  118 t 118  Q
    |    
T  47590222 t 47590222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 48316893 - 48316983
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||||||||||  ||||| |  ||| |||  ||||||||||||||||| ||||||| ||||||||||| | |||||||||||||    
T  48316893 gcacaagacgacgaacaacacaacgccgtacttagacgacgaaatcacaaaaaacacaaaagaaaaaatttgatagatgtgaaaaccactt 48316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 34899687 - 34899787
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  34899687 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 34899786  T
Q  118 t 118  Q
    |    
T  34899787 t 34899787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 25287265 - 25287366
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaac-tcaaaagagaaaatttgatatacgtgaaaaccacttgcttag 115  Q
    ||||||||||||||||||||  ||||| |||||| ||| ||| |||||||||||||| | |||||| |||| || ||||||||||||| |||||  ||||    
T  25287265 tcgcacaagacgacgaacaacacaacgccacacttagacaacaaaatcacaaaaaacataaaaaga-aaaacttaatatacgtgaaaatcacttatttag 25287363  T
Q  116 att 118  Q
    |||    
T  25287364 att 25287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 40993193 - 40993093
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||| |||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  40993193 cgcacaagatgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 40993094  T
Q  118 t 118  Q
    |    
T  40993093 t 40993093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 9450217 - 9450279
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaag 80  Q
    |||||||||||||||||||  ||||| |||||| |||  ||||||||||||||||| ||||||    
T  9450217 cgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaaag 9450279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 28476231 - 28476131
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||||| |||| |||  |||||||||| ||||||| ||||||| |||| ||||| || ||||||| |||||  |||||    
T  28476231 cgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaaaaga-aaaacttgatgtatgtgaaaatcacttatttaga 28476133  T
Q  117 tt 118  Q
    ||    
T  28476132 tt 28476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37837538 - 37837639
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||| | |||| |||| | |||||||| ||||||| ||||||| |||| || ||||| ||| |||||||||  |||||    
T  37837538 cgcacaagacgacgaacaacacaacgccgcacttagatgatgaaatcacaaaaaaacacaaaagaaaaaacttaatatatgtgtaaaccacttatttaga 37837637  T
Q  117 tt 118  Q
    ||    
T  37837638 tt 37837639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39229026 - 39228965
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaa 79  Q
    |||||||||||||||||||  ||||  | |||||||| |||||||||||||||||| |||||    
T  39229026 cgcacaagacgacgaacaacacaacaacgcactcagacaacgaaatcacaaaaaacacaaaa 39228965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 42978621 - 42978520
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaa-aactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||| | |||| |||  |||||||||||||| ||| ||||||  |||| || ||||| |||||||||||||  |||||    
T  42978621 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaagaacacaaaaggaaaaactttatatatgtgaaaaccacttatttaga 42978522  T
Q  117 tt 118  Q
    ||    
T  42978521 tt 42978520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 19296881 - 19296797
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaa 102  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | ||||||    
T  19296881 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaa 19296797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 30756899 - 30756999
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  ||||  ||||| | ||||||| |||||  ||||||    
T  30756899 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacatgatagatgtgaaaatcacttatttagat 30756998  T
Q  118 t 118  Q
    |    
T  30756999 t 30756999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 26610854 - 26610916
Alignment:
Q  47 cactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||  ||||||||||||||||| |||||  ||||| |||||||| ||| |||||||||    
T  26610854 cactcagacgacgaaatcacaaaaaacacaaaatggaaaacttgatatatgtggaaaccactt 26610916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 24350924 - 24351024
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||||| |||| |||  |||||||||| ||||||| | ||||| |||| ||||| || ||||||| |||||  |||||    
T  24350924 cgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcactaaaaaacacgaaaga-aaaacttgatgtatgtgaaaatcacttatttaga 24351022  T
Q  117 tt 118  Q
    ||    
T  24351023 tt 24351024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 12141388 - 12141487
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||||||| |||||   |||| | |||| |||  ||||||||||||||| | ||||||| |||| |||||| | |||||||||||||  ||||||    
T  12141388 cgcacaagacgacaaacaacaaaacgccgcacttagacgacgaaatcacaaaaa-cacaaaagaaaaaacttgatagatgtgaaaaccacttatttagat 12141486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 19404838 - 19404935
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    |||||||||||||||||||  |||| | |||| |||  |||||||||| ||||  |||||||  |||| ||||| || |||||||||||||  |||||||    
T  19404838 gcacaagacgacgaacaatagaacgccgcacttagacgacgaaatcactaaaa--tcaaaaggaaaaacttgatttatgtgaaaaccacttatttagatt 19404935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 45349881 - 45349974
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcaca----aaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||| |||||||||||  ||||| |||||| |||  |||||||||||    |||||| ||||||| ||||  || ||||||||||||||||||    
T  45349881 cacaaaacgacgaacaacacaacgccacacttagacgacgaaatcacagaaaaaaaacacaaaagaaaaaacctggtatacgtgaaaaccactt 45349974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 7883319 - 7883418
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||| ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||  ||||||    
T  7883319 cgcacaagacgacgaacaacacaacgccgcacttagatgacgaaatcacaaaaaacacaaaaga-aaaacttgatagatgtgaaaaccacttatttagat 7883417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 18890783 - 18890884
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttag 115  Q
    ||||||||||||||||||||  ||||||| |||| |||  |||||||||| ||||||| ||||||| |||| |||||  | ||||||| |||||  ||||    
T  18890783 tcgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaaaaga-aaaacttgatgcatgtgaaaatcacttatttag 18890881  T
Q  116 att 118  Q
    |||    
T  18890882 att 18890884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 39657458 - 39657404
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa 72  Q
    |||||||||||||||||||| ||||||| |||| |||  |||||||||| |||||    
T  39657458 cgcacaagacgacgaacaatacaacgtcgcactaagacgacgaaatcacgaaaaa 39657404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 10377700 - 10377640
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaa 78  Q
    ||||||||||| |||||||  ||||| | |||| ||| |||||||||||||||||| ||||    
T  10377700 cgcacaagacggcgaacaacacaacgccgcacttagacaacgaaatcacaaaaaacacaaa 10377640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 44091860 - 44091916
Alignment:
Q  52 agataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccact 108  Q
    |||||||||||||||||| ||| ||||||  |||| |||||| | ||||||||||||    
T  44091860 agataacgaaatcacaaataacacaaaaggaaaaacttgatagatgtgaaaaccact 44091916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 45445889 - 45445981
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaa-actcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||| |||||||  ||| |||  ||||||||| ||||| |   |||||| |||| |||||||  |||||||||||||    
T  45445889 cgcacaagacgacgaacaatacaacgtcgtacttagacgacgaaatcaaaaaaacaaaaaaaagaaaaaacttgatatgtgtgaaaaccactt 45445981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 11977018 - 11977117
Alignment:
Q  21 acaagacgacgaacaattcaacgtcacactcagataacgaaatcac--aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||| ||||| |||||| |||  ||||||||||  ||||||| ||||||| |||| |||||||| |||||||||||||  |||||||    
T  11977018 acaagacgacgaacaatacaacgccacacttagacgacgaaatcacaaaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagatt 11977117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 13007237 - 13007137
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  13007237 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 13007138  T
Q  118 t 118  Q
    |    
T  13007137 t 13007137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 6216907 - 6216807
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||   |||| | || | |||  ||||||||||||||||| ||||||  |||| |||||||| |||||||||||||  ||||||    
T  6216907 cgcacaagacgacgaacaacataacgccgcatttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagat 6216808  T
Q  118 t 118  Q
    |    
T  6216807 t 6216807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 9113805 - 9113905
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||   |||| | |||| |||  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||  ||||||    
T  9113805 cgcacaagacgacgaacaacagaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 9113904  T
Q  118 t 118  Q
    |    
T  9113905 t 9113905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 6012218 - 6012318
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||  | |||| |||  | ||||||||||||||| ||||||  |||| |||||| ||||||||| |||||  ||||||    
T  6012218 cgcacaagacgacgaacaacacaacaccgcacttagacgatgaaatcacaaaaaacacaaaaggaaaaacttgatagacgtgaaaaacacttatttagat 6012317  T
Q  118 t 118  Q
    |    
T  6012318 t 6012318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 11073980 - 11074080
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  |||||   |||| ||| |||||||||||||||||  ||||||  |||| |||||| | |||||| ||||||  ||||||    
T  11073980 cgcacaagacgacgaacaaaacaacgctgcacttagacaacgaaatcacaaaaaatacaaaaggaaaaacttgatagatgtgaaagccacttatttagat 11074079  T
Q  118 t 118  Q
    |    
T  11074080 t 11074080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 26825438 - 26825339
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||| |||||||||  ||||| | |||| |||  ||||||||||||||| | ||||||  |||| |||||| |||||||||||||||  ||||||    
T  26825438 cgcacaagaagacgaacaacacaacgccgcacttagaagacgaaatcacaaaaa-cacaaaaggaaaaacttgatagacgtgaaaaccacttatttagat 26825340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 14726539 - 14726642
Alignment:
Q  16 atcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgctta 114  Q
    |||||||||||||||||||||  ||||  | |||| |||  |||||||||| ||||||| || |||| |||| ||||||||  ||||||||||||  |||    
T  14726539 atcgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaaaaacacataagaaaaaacttgatatatatgaaaaccacttagtta 14726638  T
Q  115 gatt 118  Q
    ||||    
T  14726639 gatt 14726642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 38597805 - 38597714
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||| | ||||||  |||| |||||| | ||||||| |||||    
T  38597805 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaagcacaaaaggaaaaacttgatagatgtgaaaatcactt 38597714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 2979393 - 2979493
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||||| |||| |||  |||||||||| ||||||| | ||||| |||| ||||| || ||||||| |||||  |||||    
T  2979393 cgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacgaaaga-aaaacttgatgtatgtgaaaatcacttatttaga 2979491  T
Q  117 tt 118  Q
    ||    
T  2979492 tt 2979493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 8096618 - 8096678
Alignment:
Q  59 gaaatcaca-aaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||| |||||| ||||||| |||| |||||||| |||||||||||||  |||||||    
T  8096618 gaaatcacacaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagatt 8096678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 18011028 - 18010936
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaa-gagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||| || ||||||  |||||||||||| |||||||| ||||||||||||| ||||| || ||| ||||||||| |||||||||||||    
T  18011028 cgcacaagatgatgaacaacacaacgtcacacttagataacggaatcacaaaaaacacaaaaggaaaaactttgatatatgtgaaaaccactt 18010936  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 43488670 - 43488770
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| |||||| |||  ||||||||||||||||| |||| || |||| |||||| | |||||||||||||  ||||||    
T  43488670 cgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaatgaaaaaacttgatagatgtgaaaaccacttatttagat 43488769  T
Q  118 t 118  Q
    |    
T  43488770 t 43488770  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 47896160 - 47896060
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||| ||||||||  ||||| ||||||  ||  ||||||||||||||||| ||||||| |||| |||||||| |||||||||||||  ||||||    
T  47896160 cgcacaagacaacgaacaacacaacgccacactttgacgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagat 47896061  T
Q  118 t 118  Q
    |    
T  47896060 t 47896060  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 36461511 - 36461611
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||| ||||||| |||| |||||| | ||||||| |||||  ||||||    
T  36461511 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaatcacttatttagat 36461610  T
Q  118 t 118  Q
    |    
T  36461611 t 36461611  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 6954776 - 6954876
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||| ||||| | |||| |||  ||||||||||||||||| |||||   |||| |||||| | |||||| ||||||  ||||||    
T  6954776 cgcacaagacgacgaacaatacaacgccgcacttagacgacgaaatcacaaaaaacacaaaatgaaaaacttgatagatgtgaaacccacttatttagat 6954875  T
Q  118 t 118  Q
    |    
T  6954876 t 6954876  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 10108244 - 10108145
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||| ||||| ||||||  |||| |||||| |||||||||||||||  ||||||    
T  10108244 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcaca-aaaacacaaaaggaaaaacttgatagacgtgaaaaccacttatttagat 10108146  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 10233078 - 10232979
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||| ||||| ||||||  |||| |||||| |||||||||||||||  ||||||    
T  10233078 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcaca-aaaacacaaaaggaaaaacttgatagacgtgaaaaccacttatttagat 10232980  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 40556720 - 40556629
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||| ||||| |||||| ||||| |||||| |  ||||||||||||    
T  40556720 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacataaaacacaaaagggaaaacttgatagatatgaaaaccactt 40556629  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 12149865 - 12149955
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||| ||||||| ||||| | |||| |||| ||||||||||||||| | ||||||  |||| | |||||| || ||||||||||    
T  12149865 gcacaagacgatgaacaatacaacgccgcacttagatgacgaaatcacaaaaatcacaaaagcaaaaactggatatatgtaaaaaccactt 12149955  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 1649425 - 1649328
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaat-ttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||  ||||||| ||||| ||||||||||  |||||||||||||||    |||  ||||||| |||||||| |||||||||||||  |||||    
T  1649425 cgcacaagacggagaacaatacaacgccacactcagacgacgaaatcacaaaaa----aaacaagaaaatcttgatatatgtgaaaaccacttatttaga 1649330  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 9320066 - 9319974
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||||||||||||  ||| | | || | ||| |||||||||| ||||||| ||||||  |||| |||||| | |||||||||||||    
T  9320066 tcgcacaagacgacgaacaacacaatgccgcatttagacaacgaaatcataaaaaacacaaaaggaaaaacttgatagatgtgaaaaccactt 9319974  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 9998475 - 9998376
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||| ||||| |||||   |||| |||||| |||||||||||||||  ||||||    
T  9998475 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcaca-aaaacacaaaatgaaaaacttgatagacgtgaaaaccacttatttagat 9998377  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 10229484 - 10229385
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    ||||||||| |||||||||  ||||| | |||| |||  ||||||||||||||| | ||||||  |||| |||||| |||||||||||||||  ||||||    
T  10229484 cgcacaagatgacgaacaacacaacgccgcacttagaagacgaaatcacaaaaa-cacaaaaggaaaaacttgatagacgtgaaaaccacttatttagat 10229386  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 27706313 - 27706404
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  |||||||||||| |||  |||||||||| ||||||| | ||||| ||||| |||| || ||||||| |||||    
T  27706313 cgcacaagacgacgaacaacacaacgtcacactaagacgacgaaatcacgaaaaaacacgaaaga-aaaatctgatgtatgtgaaaatcactt 27706404  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21586041 - 21585994
Alignment:
Q  23 aagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaa 70  Q
    ||||||||||| || ||||||||||||| |||| ||||||||||||||    
T  21586041 aagacgacgaataaatcaacgtcacactaagatgacgaaatcacaaaa 21585994  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 38860200 - 38860290
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||   |||||| |||| |||  |||||||||| |||||| |||| || |||| |||||| | |||||||||||||    
T  38860200 cgcacaagacgacgaacaacaaaacgtcgcacttagacgacgaaatcac-aaaaacacaaaggaaaaaacttgatagatgtgaaaaccactt 38860290  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 7449024 - 7449082
Alignment:
Q  60 aaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||||||| ||||| |||||| | | |||||||||||  |||||||    
T  7449024 aaatcacaaaaaactcaaaagggaaaacttgatagatgcgaaaaccacttatttagatt 7449082  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 7457166 - 7457224
Alignment:
Q  60 aaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||||||| ||||| |||||| | | |||||||||||  |||||||    
T  7457166 aaatcacaaaaaactcaaaagggaaaacttgatagatgcgaaaaccacttatttagatt 7457224  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 51487111 - 51487057
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa 72  Q
    |||||||||||||||||||  ||||||| |||| |||| |||||||||| |||||    
T  51487111 cgcacaagacgacgaacaacacaacgtcccactaagatgacgaaatcacgaaaaa 51487057  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 53508232 - 53508138
Alignment:
Q  16 atcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||| ||||||||||||||||  ||||| | || |||||  |||||||||| ||||||| || |||| |||| |||||||| ||||||| |||||    
T  53508232 atcgtacaagacgacgaacaacacaacgccgcattcagacgacgaaatcacgaaaaaacacagaagaaaaaacttgatatatgtgaaaatcactt 53508138  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 19339184 - 19339095
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaa-gagaaaatttgatatacgtgaaaacca 106  Q
    ||||||||  |||||||||  |||||||||||| |||  || |||||||| ||||| ||||| || ||| ||||||||| ||||||||||    
T  19339184 cgcacaagttgacgaacaacacaacgtcacacttagacgacaaaatcacataaaacacaaaaggaaaaactttgatatatgtgaaaacca 19339095  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 21533892 - 21533989
Alignment:
Q  21 acaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||  ||||| | |||  ||| |||||||||||||||||   | |||| |||| |||||| | |||||||||||||  |||||||    
T  21533892 acaagacgacgaacaacacaacgccgcacatagacaacgaaatcacaaaaaaaatacaagaaaaaacttgatagatgtgaaaaccacttatttagatt 21533989  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 21431633 - 21431533
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||| | | |||| |||   |||||||||||||||| |||||   |||| |||||| | |||||||||||||  ||||||    
T  21431633 cgcacaagacgacgaacaacacaatgccgcacttagacggcgaaatcacaaaaaacacaaaaagaaaaacttgatagatgtgaaaaccacttatttagat 21431534  T
Q  118 t 118  Q
    |    
T  21431533 t 21431533  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 40487333 - 40487233
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  ||||||||||||||||  |||||   |||| |||| | | |||||||||||||  ||||||    
T  40487333 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaatacaaaaagaaaaacttgaaagaagtgaaaaccacttatttagat 40487234  T
Q  118 t 118  Q
    |    
T  40487233 t 40487233  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 52923197 - 52923297
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  || || |||||| |||  || ||||| ||||| || ||||||  |||| |||||| | |||||||||||||  ||||||    
T  52923197 cgcacaagacgacgaacaacacagcgccacacttagacgacaaaatcccaaaagacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagat 52923296  T
Q  118 t 118  Q
    |    
T  52923297 t 52923297  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 1742294 - 1742192
Alignment:
Q  17 tcgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaact-caaaagagaaaatttgatatacgtgaaaaccacttgcttag 115  Q
    ||||||||||||||||||||  ||||| | |||| |||  |||||||||||||||| | ||||||| |||| |||||||| |||||||||||||  ||||    
T  1742294 tcgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaaatacaaaagaaaaaacttgatatatgtgaaaaccacttatttag 1742195  T
Q  116 att 118  Q
    |||    
T  1742194 att 1742192  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8211990 - 8212090
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||| ||||||  ||||| | || | |||  ||||||||||||||||| |||||| ||||| |||||||| |||||||||||||  ||||||    
T  8211990 cgcacaagacgatgaacaacacaacgccgcatttagacgacgaaatcacaaaaaacacaaaagggaaaacttgatatatgtgaaaaccacttatttagat 8212089  T
Q  118 t 118  Q
    |    
T  8212090 t 8212090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 34479498 - 34479412
Alignment:
Q  23 aagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||||||| ||||| || |||||||  | ||||||||||||||| ||||| | |||| |||||||  |||||||||||||    
T  34479498 aagacgacgaacaatacaacgccatactcagacgaggaaatcacaaaaaacacaaaataaaaaacttgatatgtgtgaaaaccactt 34479412  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 7337744 - 7337843
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||||  ||||| | |||| |||  | ||||||||||||||| ||||||  |||| |||||| | |||||||||||||  |||||||    
T  7337744 gcacaagacgacgaacaacacaacgccgcacttagacgatgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagatt 7337843  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 35462118 - 35462208
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||||||||||  ||||| | |||| | |  ||||||||||||||||| ||||||  |||| |||||| | |||||||||||||    
T  35462118 gcacaagacgacgaacaacacaacgccgcacttacacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccactt 35462208  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 21947737 - 21947798
Alignment:
Q  57 acgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    ||||||||||||||||| ||||||| |||| |||||| | |||||||||||||  |||||||    
T  21947737 acgaaatcacaaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagatt 21947798  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 35484471 - 35484571
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||| | |||| |||  |||||| |||||||||| |||  || |||| |||||| | |||||||||||||  ||||||    
T  35484471 cgcacaagacgacgaacaacacaacgccgcacttagacgacgaaaccacaaaaaacacaattgaaaaaacttgatagatgtgaaaaccacttatttagat 35484570  T
Q  118 t 118  Q
    |    
T  35484571 t 35484571  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 23291761 - 23291823
Alignment:
Q  57 acgaaatcacaaaaaa-ctcaaaagagaaaatttgatatacgtgaaaaccacttgcttagatt 118  Q
    |||||||||||||||| | ||||||| |||| |||||||| |||||||||||||  |||||||    
T  23291761 acgaaatcacaaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagatt 23291823  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 16161843 - 16161743
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcac-aaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||  ||||||| |||| |||  |||||||||| ||||||| ||||||| |||| ||||| || ||| ||| |||||  |||||    
T  16161843 cgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaaaaga-aaaacttgatgtatgtggaaatcacttatttaga 16161745  T
Q  117 tt 118  Q
    ||    
T  16161744 tt 16161743  T

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Target: scaffold0445 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 1351 - 1261
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa-ctcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||  ||||| | |||| |||  | |||||||||||||| | |||||||||||| |||||||| |||||||||||||    
T  1351 cacaagacgacgaacaacacaacgccgcacttagacgaagaaatcacaaaaaaacacaaaagagaaaacttgatatatgtgaaaaccactt 1261  T

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Target: scaffold0634 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 8520 - 8430
Alignment:
Q  19 gcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||| ||||||| ||||| | |||| |||| ||||||||||||||| | ||||||  |||| | |||||| || ||||||||||    
T  8520 gcacaagacgatgaacaatacaacgccgcacttagatgacgaaatcacaaaaatcacaaaagcaaaaactggatatatgtaaaaaccactt 8430  T

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Target: scaffold0127 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 15500 - 15400
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccacttgcttagat 117  Q
    |||||||||||||||||||  ||||  | |||| |||| ||||||||||||||||| ||||||  |||| |||| | |  ||||||||||||  ||||||    
T  15500 cgcacaagacgacgaacaacacaacaccgcacttagatgacgaaatcacaaaaaacacaaaaggaaaaacttgaaagatatgaaaaccacttatttagat 15401  T
Q  118 t 118  Q
    |    
T  15400 t 15400  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 10122 - 10212
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||||||||||||  ||| | | |||| |||  ||||||||||||||| | ||||||  |||| |||||||| |||||||||||||    
T  10122 cgcacaagacgacgaacaaaacaaagccgcacttagacgacgaaatcacaaaaa-cacaaaaggaaaaacttgatatatgtgaaaaccactt 10212  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 71944 - 72035
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    |||||||||| ||||||||  ||||| | |||| |||  ||||||||||||||||| |||| |  |||| |||||| | |||||||||||||    
T  71944 cgcacaagacaacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaatggaaaaacttgatagatgtgaaaaccactt 72035  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 7723 - 7633
Alignment:
Q  20 cacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa-ctcaaaagagaaaatttgatatacgtgaaaaccactt 109  Q
    ||||||||||| |||||  ||||| | ||||||||| || || |||||||||| | ||||||  |||| |||||||| |||||||||||||    
T  7723 cacaagacgacaaacaacacaacgccgcactcagatgacaaattcacaaaaaaacacaaaaggaaaaacttgatatatgtgaaaaccactt 7633  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 32827 - 32928
Alignment:
Q  18 cgcacaagacgacgaacaattcaacgtcacactcagataacgaaatcacaaaaaa-ctcaaaagagaaaatttgatatacgtgaaaaccacttgcttaga 116  Q
    |||||||||||||||||||   |||| | |||| |||  |||||||||||||||| | ||||||  |||| |||||| | |||||||||||||  |||||    
T  32827 cgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttaga 32926  T
Q  117 tt 118  Q
    ||    
T  32927 tt 32928  T

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Target: scaffold0618 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 8050 - 7994
Alignment:
Q  52 agataacgaaatcacaaaaaactcaaaagagaaaatttgatatacgtgaaaaccact 108  Q
    |||||||||||||||||| ||| ||||||  |||| |||||| | ||||||||||||    
T  8050 agataacgaaatcacaaataacacaaaaggaaaaacttgatagatgtgaaaaccact 7994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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