View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2898_low_39 (Length: 298)
Name: NF2898_low_39
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_39 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 6934842 - 6935129
Alignment:
| Q |
13 |
gaatactgtgagcacttaccattggtataaagctttgagcatgtctgatacaaattatgcttttcaatgtgcaagatcaactccctggctt-ccttcctt |
111 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6934842 |
gaatactattagcacttaccattggtataaagctttgagcatgtctgatacaaattatgcctttcaatgtgcaagatcaactccctggctttccttcctt |
6934941 |
T |
|
| Q |
112 |
cagttcaaatgagcactattaaaaagctttt-aaaacaacttcacttgtaagaagcctttataagttgattaacgttaaagagaccaaaaaagggatttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934942 |
cagttcaaatgagcactattaaaaagctttttaaaacaacttcacttgtaagaagcctttataagttgattaacgttaaagagaccaaaaaagggatttg |
6935041 |
T |
|
| Q |
211 |
ctagcactatgtgattatctacaatactaaaaactcaaacatgttaatcttgtggtttcagcatcagttgattaacgttaaagagacc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6935042 |
ctagcactatgtgattatctacaatactaaaacctcgaacatcttaatcttgtagtttcagcatcagttgattaacgttaaagagacc |
6935129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 6526299 - 6526258
Alignment:
| Q |
67 |
ttatgcttttcaatgtgcaagatcaactccctggcttccttc |
108 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
6526299 |
ttatgcctttgaatgtgcaagatcaactccctggcatccttc |
6526258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 6843077 - 6843036
Alignment:
| Q |
67 |
ttatgcttttcaatgtgcaagatcaactccctggcttccttc |
108 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
6843077 |
ttatgcctttgaatgtgcaagatcaactccctggcatccttc |
6843036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 6935107 - 6935135
Alignment:
| Q |
174 |
agttgattaacgttaaagagaccaaaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6935107 |
agttgattaacgttaaagagaccaaaaaa |
6935135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University