View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_41 (Length: 274)
Name: NF2898_low_41
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 17104796 - 17104531
Alignment:
| Q |
13 |
cagacatgatttaatatattagctacatcaacaaata----atgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggtn |
108 |
Q |
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| T |
17104796 |
cagacatgatttaatatattagctacatcaacaaatattgtatgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggta |
17104697 |
T |
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| Q |
109 |
nnnnnntgttcctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtataagcaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
17104696 |
aaaaattgttcctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtgtaaacaca |
17104597 |
T |
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| Q |
209 |
aatgaagaaaaaagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17104596 |
aatgaagaaaaaagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggt |
17104531 |
T |
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