View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2898_low_5 (Length: 634)
Name: NF2898_low_5
Description: NF2898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2898_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 37337922 - 37338360
Alignment:
| Q |
11 |
caaaggaagaaaagagaaaggttgtgaagaaggttaggcataatagggttttggagttagccatagtgatatatttgtgaataggtgaagtaagtattat |
110 |
Q |
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| T |
37337922 |
caaaggaagaaaagagaaaggttgtgaagaaggttaggcataatagggttttggagttagccatagtgatatatttgtgaataggtgaagttagtattat |
37338021 |
T |
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| Q |
111 |
tggctaggttgtaatttgttagtgatgcataattcaaaggagaaaaaggattgtatttatagacggttgggactatgaaaagtatttggactttaggaga |
210 |
Q |
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| T |
37338022 |
tggctaggttgtaatttgttagtgatgcataattgaaaggagaaaaaggattgtatttatagacggttgggactatgaaaagtatttggactttaggaga |
37338121 |
T |
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| Q |
211 |
gtgacctcataatatatatgtatatatccgataatatgatgccggtctaaggataaaagttgaattcaaaaattgtatggattaaaaaatcaaaccaaag |
310 |
Q |
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| T |
37338122 |
gtgacctcata--ctatatgtatatatccgataatatgatgccggtctaaggataaaagttgaa-----------tatggattaaaaaatcaaaccaaag |
37338208 |
T |
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| Q |
311 |
tattttactttatacgtttcgtcgttannnnnnnnnnnngttgtagtcacggaataataagcctcaagaaaatgcggcattgcatgcatgagctgagatc |
410 |
Q |
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| T |
37338209 |
tattttac--tatacgtttcgtcgttattttttgtttttgttgtagtcacggaataataagcctcaagaaaatgcggcattgcatgcatgagatgagatc |
37338306 |
T |
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| Q |
411 |
atggaaataatcaattccggatattcatatgattgtgctgtttcaactttcaag |
464 |
Q |
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| T |
37338307 |
atggaaataatcaattccggatattcatatgattgtgttgtttcaactttcaag |
37338360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 497 - 618
Target Start/End: Original strand, 37338393 - 37338514
Alignment:
| Q |
497 |
aacagattcaaatataaggtaataaagtcagatcatgggcttgattccaaaaactatgaggtgttgttgattatattgtttacctacctttggcatcaac |
596 |
Q |
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| T |
37338393 |
aacagattcaaatataaggtaataaagtcagatcatgggcttgattccaaaaactatgaggtgttgttgattatattgtttacctacctctggcatcaac |
37338492 |
T |
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| Q |
597 |
aggaccatgtctatgaattaag |
618 |
Q |
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| T |
37338493 |
atgaccatgtctacgaattaag |
37338514 |
T |
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